Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22980 1521 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 452 / 3e-144 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 441 / 2e-140 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 259 / 2e-72 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 258 / 6e-72 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT2G31060 108 / 7e-24 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 107 / 2e-23 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G39900 104 / 9e-23 Small GTP-binding protein (.1) AT5G08650 100 / 2e-21 Small GTP-binding protein (.1) AT1G45332 92 / 1e-18 Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065600 [exp] 451 / 1e-143 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 450 / 2e-143 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 444 / 4e-141 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.006G190600 [exp] 303 / 1e-87 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.018G114900 [exp] 301 / 7e-87 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.001G305300 [exp] 108 / 5e-24 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.013G123700 [exp] 104 / 8e-23 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 102 / 6e-22 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.017G079800 [exp] 97 / 2e-20 AT5G39900 999 / 0.0 Small GTP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004749 [exp] 1422 / 0 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031201 [exp] 383 / 3e-118 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031763 [exp] 372 / 1e-114 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 255 / 4e-72 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 254 / 2e-70 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 253 / 6e-70 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031186 [exp] 218 / 1e-61 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031185 [exp] 205 / 3e-59 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10043477 [exp] 174 / 3e-46 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10007838 [exp] 131 / 4e-35 AT3G22980 111 / 4e-29 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [poplar] [flax] EF-G_C PF14492 [poplar] [flax] EFG_III Elongation Factor G, domain III
Representative CDS sequence Show only first row Show all	>Potri.009G152500.1 pacid=42771486 polypeptide=Potri.009G152500.1.p locus=Potri.009G152500 ID=Potri.009G152500.1.v4.1 annot-version=v4.1 ATGGGTGATTTTGATGAAACCCGAAATATACGAAACATGTGCATACTAGCACATGTTGATCATGGCAAGACAACTCTTGCTGACCATTTAATTGCTGCAA CGGGTGGGGGTTTGCTTCACCCTAAATTAGCTGGGAAACTTAGGTTTATGGATTTTCTTGATGAGGAACAAAGGCGTGCGATAACGATGAAGAGCTCGTC GATTTCTCTTCATTATAAGGATTATTCAGTCAACCTTATAGATTCACCTGGTCATATGGATTTTTGTAGTGAAGTTTCAACTGCTGCGAGGTTGAGTGAC GGGGGATTGGTTTTGGTTGATGCTGTTGAGGGGGTACATATACAGACGCATGCTGTTTTGCGTCAAGCTTGGATTGAGAAGCTTACGCCTTGTTTAGTGC TTAATAAGATTGATAGGTTGATATGTGAGTTGAAAATGAGTCCGATGGAAGCTTATAATCGGTTGGTGAAGATTGTTCATGAGGTGAATGGGATAATGAG TGCTTATAAGTCGGAGAAGTATTTGTCTGATGTCGATTCAATACGTGCTGGGCCCTCTGGTGAGGGTGAAGATGAGAATCTTGAGTTTATAGAGGATGAT GAGGAGGACACTTTTCAACCACAGAAAGGGAATGTGGCATTTGCTTGTGCACTGGATGGGTGGGGTTTTACTATTCATGAGTTTGCTGAGTTTTATGCCA CAAAGCTTGGAGCAAGCTCAGCTGCATTGCAGAAGGCTCTCTGGGGTCCTAGGTATTTCCATCCAAAGACGAAGATGATTACGGTGAAGAAGTTTGTGGA TGCAGGCAGCAGGGAGCGTCCTATGTTTGTGCAGTTTGTGCTGGAACCACTGTGGCAAGTTTACCAATCTGCTTTAGAGCCTGATGGGAATAAAGGCTTA CTCGAGAAAGTCATAAAATCATTTAATTTGAATGTACCACCCCGTGAGCTTCTGAATAAGGATCCAAAGGCTGTGCTGCAATCTGTTATGAGTCGCTGGC TTCCTTTGTCAGATGCAATTTTGTCGATGGTTGTGAAGTGCATGCCGGATCCAATTGCAGCTCAATCCTTTCGGATATCACGTTTGATTCCCAAGAGAGA AGTTTTGCTTGATGGGGTCGACTCTAGTGCTCTTGCAGAGGCGGATCTTGTTAGAATGTCTATTGAGGTTTGTGATTCCAGTCCTGAAGCACCTTGTGTT GCTTTTGTATCCAAAATGTTTGCTGTCTCATCAAAATTGTTACCTCAAAGGGGTTTGAATGGGGAGATTCTGAGCAATTTTAGTGATGAAAATGGAAACA GTGAATCAGATGAGTGTTTCCTTGCATTTGCTAGAATTTTTAGCGGGGTTCTTTGTTCTGGACAAAGAGTCTTTGTGCTTTCAGCATTGTATGACCCATT GAAGGGGGAGTCAATGCAGAAGCACATACAGGTGGCTGAGCTGCACTCGTTGTATCTAATGATGGGTCAAGGCTTGAAACCAGTGGCTTCTGCGAAGGCT GGGAATGTTGTGGCAATCCGAGGCCTTGGCCAGCATATATTGAAAAGTGCAACTCTATCATCCACCAAAAACTGCTGGCCTTTCTCAAGCATGGCATTCC AGGTGGCCCCAACTCTGAGAGTTGCTATTGAACCTTCTGATCCAGCTGATACTGGTGCTCTGATGAAAGGTTTGAAGCTTCTGAACCGGGCTGATCCATT TGTGGAGGTTACTGTTTCCTCTAGAGGGGAACATGTTCTGGCTGCTGCTGGAGAAGTTCATCTGGAAAGGTGCATTAAGGATTTGAAAGAGAGGTTTGCA AAAGTGAGCCTGGAAGTCTCTCCACCTCTTGTGTCCTATAGGGAGACTATTGAGGGAGAAGCGTCCAATATGTTAGATAACCTGAAATCATCTACTAGAA GCTCAGATTATGTTGAGAAGATGACACCGAATGGAAGATGTGTTGTTCGTGTGCAAGTCATGAAACTTCCATCTGCACTAACCACGGTGCTTGATAAAAG CACTGATCTACTAGGAGATATTATCGGTGGTAAGCTGGGGCAGTCAGCTAGCAACTTGGAAACAGAGAAATCAAACATTGTGCAAGATGAGAGTCCAATT GAAGTTCTAAAAAAACGCATAATGGGTGCTGTGGAGAGTGACATTTTGTCATTGAGTAAGAAGGACAAGGATCGGGCTGAAAAGTACAAACTTAAGTGGC AAAAGTTTCTGAAGAGGATCTGGGCACTTGGACCGAGACAAGTTGGCCCTAACATCCTCTTCACTCCTGATTCCAAAAGCTTGAGCAATGATTCCTCTGC TCTTGTACGGGGTTCCCCTCATGTTTCTGAAAGGTTGGGGTTGGTGGAATGTTCTGGTACTGGTGAAATGCCTGCTGACACATCCTCAGAAGAGCTTAGT GCATTATACAGGGAAGCAGAGAGTCTTCAGAACAGTGTAGTGTCTGGATTTCAATTAGCAACAGCAGCTGGCCCCTTATGTGATGAACCAATGTGGGGAT TGGCTTTTGTTGTTGAGGCCTGCATAAATCCTTTGGCTGAGAAATTTGATGATTCCGAGTCTAATCAACAATCTGAGCAGTATGCGATCTTCACTGGACA GGTAATGACAGCTGTGAAAGATGCATGTAGAGCAGCTGTACTTCAGAAGAAACCTCGGCTTGTTGAAGCAATGTATTTTTGTGAGTTGAACACCCCACCT GAATATCTGGGCTCTATGTATGCTGTGCTTAATCAGAAACGAGCCCAGGTCTTAAACGAGGAAATGCAGGAAGGATTTGCACTTTTCTCGGTTCAAGCAT ACGTCCCAGTTTCTGAAAGCTTTGGTTTCGCTGAAGATCTTAGAAGAAAGACTGCGGGTGCTGCAAGTGCTCTTCTTGTACTGAGTCACTGGGAAGAACT TTCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAGATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCTAACACAGCAAGAAAGCTCATTGAT GCTGTAAGGCGGCGGAAGGGCCTCCCTGTGGAGGAAAAAGTAGTCCAGTTTGCAACTAAACAGAGGACCCGTGCTCGTAAAGTGTAG
AA sequence Show only first row Show all	>Potri.009G152500.1 pacid=42771486 polypeptide=Potri.009G152500.1.p locus=Potri.009G152500 ID=Potri.009G152500.1.v4.1 annot-version=v4.1 MGDFDETRNIRNMCILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDFLDEEQRRAITMKSSSISLHYKDYSVNLIDSPGHMDFCSEVSTAARLSD GGLVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKMSPMEAYNRLVKIVHEVNGIMSAYKSEKYLSDVDSIRAGPSGEGEDENLEFIEDD EEDTFQPQKGNVAFACALDGWGFTIHEFAEFYATKLGASSAALQKALWGPRYFHPKTKMITVKKFVDAGSRERPMFVQFVLEPLWQVYQSALEPDGNKGL LEKVIKSFNLNVPPRELLNKDPKAVLQSVMSRWLPLSDAILSMVVKCMPDPIAAQSFRISRLIPKREVLLDGVDSSALAEADLVRMSIEVCDSSPEAPCV AFVSKMFAVSSKLLPQRGLNGEILSNFSDENGNSESDECFLAFARIFSGVLCSGQRVFVLSALYDPLKGESMQKHIQVAELHSLYLMMGQGLKPVASAKA GNVVAIRGLGQHILKSATLSSTKNCWPFSSMAFQVAPTLRVAIEPSDPADTGALMKGLKLLNRADPFVEVTVSSRGEHVLAAAGEVHLERCIKDLKERFA KVSLEVSPPLVSYRETIEGEASNMLDNLKSSTRSSDYVEKMTPNGRCVVRVQVMKLPSALTTVLDKSTDLLGDIIGGKLGQSASNLETEKSNIVQDESPI EVLKKRIMGAVESDILSLSKKDKDRAEKYKLKWQKFLKRIWALGPRQVGPNILFTPDSKSLSNDSSALVRGSPHVSERLGLVECSGTGEMPADTSSEELS ALYREAESLQNSVVSGFQLATAAGPLCDEPMWGLAFVVEACINPLAEKFDDSESNQQSEQYAIFTGQVMTAVKDACRAAVLQKKPRLVEAMYFCELNTPP EYLGSMYAVLNQKRAQVLNEEMQEGFALFSVQAYVPVSESFGFAEDLRRKTAGAASALLVLSHWEELSEDPFFVPKTEEEIEEFGDGSSVLPNTARKLID AVRRRKGLPVEEKVVQFATKQRTRARKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22980			Ribosomal protein S5/Elongatio...		Potri.009G152500 [exp]	0	1
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	3.74	0.8843	Pt-EIL3.2
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Potri.002G038300 [exp]	4.00	0.8561	Pt-ATTIM44.1
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	4.89	0.8815
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.006G104700 [exp]	6.32	0.8671
AT1G36990			unknown protein		Potri.005G172100 [exp]	9.79	0.8360
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	11.22	0.8601
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	11.61	0.8774
AT1G36310			S-adenosyl-L-methionine-depend...		Potri.002G091300 [exp]	13.78	0.8646
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.001G370300 [exp]	15.29	0.8142
AT5G52530			dentin sialophosphoprotein-rel...		Potri.017G142600 [exp]	17.32	0.8406

Compare expression of checked genes

Potri.009G152500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.