Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36300 365 / 6e-129 Integral membrane Yip1 family protein (.1) AT3G52760 362 / 7e-128 Integral membrane Yip1 family protein (.1) AT4G30260 41 / 0.0005 Integral membrane Yip1 family protein (.1) AT2G18840 40 / 0.0009 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190800 [exp] 452 / 2e-163 AT2G36300 367 / 8e-130 Integral membrane Yip1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021374 [exp] 412 / 1e-147 AT2G36300 380 / 5e-135 Integral membrane Yip1 family protein (.1) Lus10022723 [exp] 375 / 4e-133 AT3G52760 346 / 8e-122 Integral membrane Yip1 family protein (.1) Lus10017054 [exp] 323 / 1e-111 AT3G52760 315 / 3e-108 Integral membrane Yip1 family protein (.1) Lus10014191 [exp] 78 / 3e-16 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [poplar] [flax] Yip1 PF04893 [poplar] [flax] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Potri.009G152600.1 pacid=42771579 polypeptide=Potri.009G152600.1.p locus=Potri.009G152600 ID=Potri.009G152600.1.v4.1 annot-version=v4.1 ATGTCGAGGGAATTCGCTGTGCCACCAGTAGTCTTCCCGTCCGGCGGAAACCCGACTGTCGCCACTGGCGGAAACATCCAGCAACGCCGAGTACCAACTG CTCCATTCCAACCTTCTCGTCCATCAAACTCCGGAATCCCTTTCATGTCATTCGAAATCGGATCCGCTGCCACGAACACCTCCGGTCCAATCGGCGGAGG AACTGGTCCTATCGGCGGTGCAGCCAACTTCGACGACGAAGAACCACTCCTCGACGAACTCGGGATCCACCCAGACCAAATCTGGAAGAAAACCAAATCG ATTTTAAATCCATTCCGGGTCAACCCGACGTTCCACAAGGATTCGGATCTATCCGGCCCGATATTTTTGTATCTCTCGTTCTGCTTGTTTCAATTACTTG CCGGAAAAATCCAATTTGGCGTCATACTGGGATGGATTGTCGTTTCCTCGATTTTCTTATACGTTGTGTTCAATATGTTGGCTGGTAGACATGGGAATTT AGACCTGCACACGTGTACGAGTGTGATTGGTTACTGTTTGTTGCCAGTGGTGATTTTATCGGCGGTTTCGCTGTTTGTGCCGCAAAATGGGGCTATTAGG TTGGGGATTTCTGGGGTTTTCGTGATTTGGTCTACGAGGGCTTGCACGAATTTGATGGTTGCTGTTGCTGATGGTGGAGAGGAGCACCGTGGATTGATTG CGTACGCCTGTTTCTTGATTTACACTCTGTTTTCATTGCTTGTTATATTTTAG
AA sequence Show only first row Show all	>Potri.009G152600.1 pacid=42771579 polypeptide=Potri.009G152600.1.p locus=Potri.009G152600 ID=Potri.009G152600.1.v4.1 annot-version=v4.1 MSREFAVPPVVFPSGGNPTVATGGNIQQRRVPTAPFQPSRPSNSGIPFMSFEIGSAATNTSGPIGGGTGPIGGAANFDDEEPLLDELGIHPDQIWKKTKS ILNPFRVNPTFHKDSDLSGPIFLYLSFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRHGNLDLHTCTSVIGYCLLPVVILSAVSLFVPQNGAIR LGISGVFVIWSTRACTNLMVAVADGGEEHRGLIAYACFLIYTLFSLLVIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36300			Integral membrane Yip1 family ...		Potri.009G152600 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.001G236900 [exp]	3.60	0.7676
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Potri.011G109500 [exp]	6.70	0.7124
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.004G115900 [exp]	9.32	0.6678	Pt-AKIN10.2
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	12.24	0.7190
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	12.60	0.7520	MBD5.2,MBD904
AT3G01050		MUB1	membrane-anchored ubiquitin-fo...		Potri.004G124600 [exp]	16.55	0.7540
AT3G54130			Josephin family protein (.1)		Potri.016G110300 [exp]	23.23	0.6926
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	24.00	0.6901	RAB11.4
AT5G27990			Pre-rRNA-processing protein TS...		Potri.013G035000 [exp]	25.76	0.7423
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.019G121400 [exp]	26.98	0.6956

Compare expression of checked genes

Potri.009G152600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.