Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43610 855 / 0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT3G53760 73 / 1e-12 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT5G06680 64 / 7e-10 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT5G17410 50 / 1e-05 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT1G80260 49 / 2e-05 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G184450 [exp] 61 / 8e-11 AT3G43610 44 / 9e-06 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.016G059900 [exp] 57 / 6e-08 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.006G194200 [exp] 57 / 7e-08 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.014G128400 [exp] 57 / 8e-08 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.010G180700 [exp] 53 / 1e-06 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.016G000100 [exp] 44 / 0.0006 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008428 [exp] 894 / 0 AT3G43610 715 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10003354 [exp] 233 / 2e-65 AT3G43610 274 / 4e-80 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10003353 [exp] 154 / 2e-43 AT3G43610 136 / 2e-38 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10013394 [exp] 92 / 6e-22 AT3G43610 71 / 1e-15 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10016246 [exp] 57 / 8e-08 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029296 [exp] 52 / 3e-06 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10028588 [exp] 45 / 0.0003 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10018892 [exp] 45 / 0.0004 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [poplar] [flax] GCP PF04130 [poplar] [flax] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Potri.009G153300.1 pacid=42772491 polypeptide=Potri.009G153300.1.p locus=Potri.009G153300 ID=Potri.009G153300.1.v4.1 annot-version=v4.1 ATGGCAGTCGACACGAATTTCTCTTCATTTTTCGACAAATTAAAACTACTAGAAGAAGATCCACTGATTCTCCCTCCCAAAACCTGGGAATCAATCCCTT CCCAAAATGCCCCTACTTCTTCTTCCTATTTCCCCCCCCAACCACCGCCACCACTCCTCCACCACTCTCCCTCTCCTTCCCTCTCCGAGGAAAGTTTGGT GAGGCTAGCATTGAACGCACTGCAGGGTTCAGAATCGGCTCTTATCAGTATCGAAAAGCTCTCTGCTGTGTTCATATCCGACCCGGCCGATCGGACTTAC CATACAATTCCCAATCTATGGAACCGGTCTACCAGCACACACGCATTGGGGAAGTTTCTGACCTCCATTGCTCGTTCCGGTTTCGTAATTTTTCTTCTCC GTAAATTTGTAGATTATTTTAACAATTTTAATTTCGAAGCATATTTGGACGCGGCCTCTTCTTATAGTTTAGTTAATCAAGCGTTTAGTGTTGCGGTAGG GAAGGTTTTAGAAGGGTATATGAGTGCGCTTGGTACATTATATGCTTCGATAGATTTGAGGCGCTCCTCGAAGAGTAATGGTGTTGATCTTAAGAATTGT AGAGTGTCGTGCTTTACGAGTGTGGTGCATTCTGAAGTTACATTGTTGGAGGTGTTTTTGCATACAAAGGAATTGAGGACTCAGGTTGAAGTGCTTGGGA ATGTGTGTAATGTTCAAAGTGTAGCTCTTTGTTTCTTGGAGTCTTCGGTTGAAGAGTTGACTGCGAAAGCAAGCTTGGAGTTTTGTAATTTCTATAGAGG AGGGGATCTTCTTACTTATTTGTATAGGCAACTACAGGTTGCTGATCCTGCTCACCGTGCTCTGCTCAAGTTCCTGTTTATTCGCTCATGTCAACCATAT ATTGGATTTATAAGATCGTGGATATACGAGGCAGAGATTAGTGATCCGTACAAGGAATTTATGGTAGAATATGCTGATAATCTATCTCCTCATCCACATT ACAAAGGTGGCATCCCTATCGACTTTGTGTTGGCAAGTATTCAGGACAGGGTTGCTGTTCCTTGTTTTCTGAAGGACTTTTTTATTCCAATTGTCAGAGC TGGTCAGCAGCTTCAAGTGCTAAAGAAATTGCTTGAATTATGTAATTATGTTGGCCCTGAAGAGTATACTTGTGAGGATTTGCTTCCCAGTTGGAGGGGA TATTTAAGCAGTCATTTGTTTTCTGCATCTCCATTGACTTTCAGTAAAGGATATCTAGAAGCCATGGTAATTGCAAGGAACAATTATTATGAAAACATGC TAGAGAAGATAAAAAATCTGTCGTCGAAGTTGGAATTTAGGCATCGGCAGGTAGTTCCACATGGCACTATATCTATTGCCTTTGACAATGGTGAAGGGAG TTCAAAGAATGCAGTTTCACATATGTTTTTTGACAGGGCTGTTGATAACACCGATTTTGATGACTCTAGCACAAGTGATGAGTGCTATGTGTTGGGTACA TCTGATTCATCTGAATGTTCATCTTTAAGTGGGTCTGAAGAGCAAGCGGAGGCTGAGCAGCTAATTGAGCAGGGTAATGGTTTGGTTGGAGATGAACAGA GATACTTATCTTCCTTGAGGTTTTCCATGAGTAGCCCAACTGATACTGCATTGCGAAAGCCTACTCAAAGTGAAATTTCACGTGACATCGAAACTGACTC ACGTAAAAATAGTGAAGAAAACAATTTTGTTGGCCATTTCATGCGTGTTTATGATAAGAAAAGAACTTCGAGTCATGAATTTCCACCCCCTGATTCAGAG GAGTCAAATTCATCATGCATGTTTGATAATATAGATAGTGTAATTGGTAAGGGCTGGCAGCTTGGCCTTCCAAAAAATTCTGTTTACAATGACAAATGGC AGAGCTTTTATCCATGGTCAGATCATTGTGACTCTGTCCAAGAAGCGAGTAAAACAAATATGGGAATTTTGAAAGCAGATCTACCATATTTTACCCATAT GACTTCTGCTAAAGATGTTTTAATAGAGAAAGCCTCAGGAGCTGATCAACTTAAAAACAGAAACTCTACTTCAAGTTTATTTGCATTACAGCCATGGAAG GTTAATTACCACTCTAATTTTCTAAGTAGAAACCCAATGTTGAAAAAAAATGCCTGCTTTCACCTTGTAACCATGCCCAAAGAGAAATGCAGCACAGCAT ATGTACCATCTTTACCTTGCTTTGACTTTTCAACTGTTGAAGACCCTTGTAAGGCATCTGTAGAAAAGTTCGCTGCCAGTTTCCGACATGAATTTGGGTC TCCGGTTCCGCTGCATATTACTGCTCCAGCTACCAGTGGTAAGAGTCATGATAAGGGTAAACAAGGCTGTGATGGAGAAGCTGTCTTGTTTGATAATGCC AGAGCATGTGTTAGTGACTCGTCAGTACACTTGAAAGAACAAGATAAAGAAGCTGTTGTTTCAACAAATGGTTGTGGTGGGACTAGTTGGCAGAGCCTGC TTAAGAGTTTTAGTTACACTGAAAATGAAAGTGTTGGAGATCACAGGGAGAGTTTGTCATCCACGTTCGAGATTCCACTCGATTTTGTCATCGACAAATG CTTGCTGCAGGAAATCTTGCTCCAATATAAATATGTCAGCAGGCTTGCTATTAAGCTGCTTGAAGAGGGTTTTGATTTGCAAGGACATTTACAGGCTTTG CGGCGGTACTACTTCATGGAATCAGCAGACTGGGCAGATTTGTTCATCATGTCCCTTTGGCATCATAAGTGGTGTGTTGCCGAGGCTGAGCAGAGGGTGT TAGAAATTCAACGGTTCCTTGAGTTGTCAGTTAAGAGGTCATCATGTGAACGAGACCCTAATAAGGATCGGTTGTTTGTCTACATGAAAGGGAATGATAC AATGCCCCTTTCAGCATTTACAATTGGAGTGCATTCCTTCAATTTTTTGGGTTTGGGTTACCGAGTGGATTGGCCAATTAGCATTGTTTTGACTCCAAGT GGATTGAAAATATATGCTGAGATATTCAGTTTTCTGATACATGTGAAGCTTGCTGTTTTCTCTTTGACTGAAGTATGGCGCTCACTGAAGGATATGACGC ACATGGTGACCCGAAATCATTCTACAACACAAGAACGCGGAATTCGCCATCTTAACATTTTGATAACAATGAGGCACCACATCAATCATTTTATATCTGC ATTGCAACAGTATGTGCAGTCACAGTTATCTTATGTGTCATGGTGCAAGTTTCTCCGCTCCCTAAAGTATAAGGTCAAAGACATGATGGATCTGGAGTCA GTGCACATGGCATATTTAACTGATTCACTACACATATGTTTTCTCTCTAATGAAACACGGTCTGTAGCCATCATTATTGAAAGCATTTTGCAATGTGCCT TTGAGTTTCGGTCTTGTTTTACTGGTGGCATGTGGGATATGGGACTGGATCAAGGAGACTTGTTGGGTAAACTTTCTAGAATCAATATATCCCAGGTGCT TGCCATAAAGCAAAAGTTCGACAAAAATTTGAAACAATTGCATTTATGCTATCTCAAGTTTCCTAAGCATGGGGAGTTTGGGCTATCCCGTTTCTGGGGA TATCTCAACTACAACAAGTACTACTCAGATGTTGGAAATGAAATGGACCTTTATGCCTTGTGA
AA sequence Show only first row Show all	>Potri.009G153300.1 pacid=42772491 polypeptide=Potri.009G153300.1.p locus=Potri.009G153300 ID=Potri.009G153300.1.v4.1 annot-version=v4.1 MAVDTNFSSFFDKLKLLEEDPLILPPKTWESIPSQNAPTSSSYFPPQPPPPLLHHSPSPSLSEESLVRLALNALQGSESALISIEKLSAVFISDPADRTY HTIPNLWNRSTSTHALGKFLTSIARSGFVIFLLRKFVDYFNNFNFEAYLDAASSYSLVNQAFSVAVGKVLEGYMSALGTLYASIDLRRSSKSNGVDLKNC RVSCFTSVVHSEVTLLEVFLHTKELRTQVEVLGNVCNVQSVALCFLESSVEELTAKASLEFCNFYRGGDLLTYLYRQLQVADPAHRALLKFLFIRSCQPY IGFIRSWIYEAEISDPYKEFMVEYADNLSPHPHYKGGIPIDFVLASIQDRVAVPCFLKDFFIPIVRAGQQLQVLKKLLELCNYVGPEEYTCEDLLPSWRG YLSSHLFSASPLTFSKGYLEAMVIARNNYYENMLEKIKNLSSKLEFRHRQVVPHGTISIAFDNGEGSSKNAVSHMFFDRAVDNTDFDDSSTSDECYVLGT SDSSECSSLSGSEEQAEAEQLIEQGNGLVGDEQRYLSSLRFSMSSPTDTALRKPTQSEISRDIETDSRKNSEENNFVGHFMRVYDKKRTSSHEFPPPDSE ESNSSCMFDNIDSVIGKGWQLGLPKNSVYNDKWQSFYPWSDHCDSVQEASKTNMGILKADLPYFTHMTSAKDVLIEKASGADQLKNRNSTSSLFALQPWK VNYHSNFLSRNPMLKKNACFHLVTMPKEKCSTAYVPSLPCFDFSTVEDPCKASVEKFAASFRHEFGSPVPLHITAPATSGKSHDKGKQGCDGEAVLFDNA RACVSDSSVHLKEQDKEAVVSTNGCGGTSWQSLLKSFSYTENESVGDHRESLSSTFEIPLDFVIDKCLLQEILLQYKYVSRLAIKLLEEGFDLQGHLQAL RRYYFMESADWADLFIMSLWHHKWCVAEAEQRVLEIQRFLELSVKRSSCERDPNKDRLFVYMKGNDTMPLSAFTIGVHSFNFLGLGYRVDWPISIVLTPS GLKIYAEIFSFLIHVKLAVFSLTEVWRSLKDMTHMVTRNHSTTQERGIRHLNILITMRHHINHFISALQQYVQSQLSYVSWCKFLRSLKYKVKDMMDLES VHMAYLTDSLHICFLSNETRSVAIIIESILQCAFEFRSCFTGGMWDMGLDQGDLLGKLSRINISQVLAIKQKFDKNLKQLHLCYLKFPKHGEFGLSRFWG YLNYNKYYSDVGNEMDLYAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	0	1
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.008G152600 [exp]	5.09	0.8534
AT2G25730			unknown protein		Potri.006G244900 [exp]	5.47	0.8481
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.011G136102 [exp]	6.48	0.8020
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	6.70	0.7726
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	13.85	0.7709
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.012G064200 [exp]	17.02	0.7248
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	18.11	0.7058
AT4G35870			early-responsive to dehydratio...		Potri.007G063700 [exp]	23.62	0.7005
AT3G05670			RING/U-box protein (.1)		Potri.005G021000 [exp]	24.26	0.7666
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	27.27	0.8112

Compare expression of checked genes

Potri.009G153300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.