Plant FIBer expression Database

Potri.009G153600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G43600 1742 / 0 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
AT1G04580 1717 / 0 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1)
AT2G27150 1707 / 0 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2)
AT5G20960 1689 / 0 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2)
AT4G34890 500 / 2e-153 ATXDH1 xanthine dehydrogenase 1 (.1)
AT4G34900 488 / 4e-149 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1)
AT1G02590 81 / 5e-18 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1)
AT1G50780 54 / 4e-07 2Fe-2S ferredoxin-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G191300
[exp]
2106 / 0 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2)
Potri.009G054600
[exp]
531 / 4e-165 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013393
[exp]
1845 / 0 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10008429
[exp]
1828 / 0 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10019386
[exp]
1794 / 0 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10040474
[exp]
1658 / 0 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10011279
[exp]
1437 / 0 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2)
Lus10034306
[exp]
501 / 6e-154 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1)
Lus10023586
[exp]
199 / 1e-58 AT3G43600 209 / 5e-63 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0077 FAD_PCMH PF00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase
CL0077 PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CL0486 Fer2 PF01799 Fer2_2 [2Fe-2S] binding domain
CL0486 PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
CL0233 SufE_NifU PF03450 CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain
Representative CDS sequence
>Potri.009G153600.1 pacid=42772064 polypeptide=Potri.009G153600.1.p locus=Potri.009G153600 ID=Potri.009G153600.1.v4.1 annot-version=v4.1
ATGGAAGAGAAGCAGAGGGAAACAGGCAGAGGGAGTCTAGTTTTTGCCGTCAACGGACAGAGGTTCGAGGTGTCGTCGAGATTAGACCCTTCAACAACCT
TGCTTGAGTTCTTGCGAACCAGGACATCTTTCAAGAGTGTCAAGCTCGGTTGTGGCGAAGGTGGTTGTGGTGCTTGCATTGTTCTACTCTCCAAGTATGA
TCCTGTGCGTGACCAAGTTGAGGATTTCACAGTCAGTTCATGTCTCACACTGCTTTGCAGTGTGAATGGATGTTCGGTTACAACATCTGAAGGCCTTGGA
AATAGCAAAGATGGATTCCATCCGATTCACCAGAGATTCAGTGGTTTCCATGCTTCTCAATGTGGCTTTTGTACTCCTGGAATGTGTGTTTCACTCTTCG
GAGCCCTTGTTAAAGCTGAAAAGAATGACCTAAGGGAGCCTTCTCCAGGATTCTCCAAGCTGACAGTCGTTGAAGCTGAAAAGGCTATCTCAGGAAATCT
TTGTCGCTGTACTGGATATCGACCCATTGCTGATGCGTGTAAGAGTTTTGCGGCTGATGTTGATATTGAAGATTTGGGATTAAACTCTTTTTGGAAGAAG
GAAGAGAGTCGCGAAGCGAAGATGAGTAGGCTACCTTTATATGACCATAATCATGAGATATGCACTTTCCCTGAATTTTTGAAAAGGGAAATAAAATCTT
CCTTGCTTTTGGATTCTGAAAGATATTCTTGGTGCACACCTGCTACTGTTGAGGAGCTTCAGAGCTTATTAAAAAGCATTGATGCCGACTGCAAAACCAG
GATGAAACTAGTGGTTGGTAACACAGGTATGGGTTATTACAAGGACCTAGAGCACCATGACAGGTACATAGATCTCGGATGTGTTCTGGAGCTCTCGAGT
ATTAGGAGGGATGAAGAAGGAATAGAAATCGGGGCAGCTGTCACTATTTCTAAAACTATTGAAGCTCTGAAGGAAGAAATTAACAGCGAGTTTAATTCAG
AATGCAAGATTGTGTTTAAAAGAATTGCATTGCACATGGAGAAGATTGCTTCTGAATTTGTTCGAAATACAGGCAGTGTAGGGGGGAATTTGGTGATGGC
ACAAAGGAAACATTTTCCATCAGATATTGCCACGATACTGCTGGCAGCAGGTGCATTTGTTCACATTCTAACTGGTACCTTGCATGAAAAGCTTACTTTA
GATGAGTTTCTGGAAAGGCCTCCATTGGATTCCAAAAGTGTGCTATTAAATATTAAGATTCCAAATTATGCAGCATCCAAGAACATATCTTCTGAAATGG
ACAGCAAGTTGTTATTCGAAACTTATCGTGCTGCACCGCGACCCCTTGGAAATGCATTGCCCTATTTAAATGCAGCTTTCTTGTCTGAAGTTTCCTGTTT
GAAATCTTCTGGTTCAGCCGTGTTAAATAAATGCCGGGTCGTTTTTGGTGCTTATGGAACCAAACATGCTATCAGAGCAAAGGAAGTTGAGAAATTTTTG
TCTGGAAAAATACTAACCATTGGTGTTCTATATGAAGCTGTTAAACTGGTTAAAGCCAATGTGGTTCCTGAAGATGGCACGCCGAGTCCGGCCTACAGGT
CAAGCTTAGCTGCTGGTTATCTCTTTGACTTTCTCTACCCCTTGATAGACATTAACTCTAAAATTTCTGGTGTTTGGTCGGATGAATATTGTAATACTTC
ATTGTTCAAGGATGCAAAAATAAAACAGAAGTACAGCCAGCTTGATCATGTGCAATTACCCACTTTGCTGTCATCATCAGAGCAGGTGCTTGAATTAAAC
AATGATCATCATCCTGTTGGTCAGCCTACTAAGAAAGTTGGAGCCGCCCTTCAAGCTTCTGGGGAGGCTGTTTTTGTGGATGACATTCCCTCTCCTACAA
ATTGTCTACATGGAGCATTCATTCATAGCATGAAGCCTTATGCAAGGGTCAAGGATATCAAATTCAAGTCTAAATTACTACCAGATGGAGTTTCTGGGCT
GATTTCGGTCAGAGACATTCCAGAAGGTGGGGAGAACAGAGGTTGTACGACTAGTTTTGGCACTGAATCTTTGTTCGCAGATGAGCTTACGCAGTATGCT
GGAGAGCGTCTTGCTTTTGTGGTTGCAGATACACAGAAACATGCTGATATAGCATCCAGCCTTGTTGAAGTTGATTATGACATTGAAAATCTAGAACCAC
CCATTTTAACTGTAGAAGAGGCCATTAAGAGATCTAGCCTTCTCGAGGTTCCTCTTCTCCTCTACCCCAAACAAGTTGGTGATATATCAAAAGGATTGGC
TGAGGCTGATCACAAGATTCTCTCTGCCAAGATAAAACTCGGTTCACAGTACCATTTCTATATGGAGACTCAAACTGCCCTTGCGATTCCTGATGAAAAC
AACTGCATGGTGGTTTACAGTTCAACCCAGTGTCCCGAATATGCACATGTTAACATTGCAAAATGTCTTGGTATTCCTGAGCATAATGTGCGTGTGATTA
CAAGGAGAGTCGGAGGAGGCTTTGGTGGAAAGGCCATGAAAGCAATTCCTGTTGCTACAGCATGTGCTCTTGCAGCGCACAAGTTTCGTCGCCCTGTGAG
AACGTATTTGAATCGCAAGACCGATATGATAATGGCAGGAGGAAGGCATCCCATGGAAATAACTTATAATGTAGGATTTAAATCAAATGGGAAAGTTACA
GCCTTACAGCTTGATATATTAATCAATGCTGGAATATCTTTCGATATAAGTCCAGTGATGCCAGAAACCATTCTGAGTGGGCTAAAAAAGTATGACTGGG
GTGCTTTATCTTTTGATATAAAGGTATGCAAAACAAATCATTCAAGTAAAACAGCAATGCGAGCCCCTGGGGAGGTACAAGGATCATACATTGCAGAAAC
CGTAATCGAACATGTAGCGTCTACCCTTTCCATGGATGTGGATTCTGTGAGAAACATAAATTTTCACAGATATGATAGCCTTAAATTATTCTATGATGTT
GCCTCAGGTGATTCTGTAGAGTATACTCTAACATCAATATGGAATAAGTTAGCAGAATCTTCAAGCTTCAAACAAAGGGTTGAAATAATAAAGGAGTTCA
ATAGGTGTAAGGTGTGGAAGAAAAGAGGTATTTCTCGAGTGCCTATTGTGCATCAAGTGTTCGTGGGACCAACTCCGGGGAAAGTAAGCATTCTAAGTGA
TGGGTCGGTTGTTGTTGAAGTCGGCGGAATAGAGTTGGGTCAAGGGCTCTGGACAAAGGTAAAACAAATGGCTGCATTTGCTCTCAGCTCAATCAAATGT
GACGGGGTAGAAAATCTTCTGGACAAAGTAAGGGTAATACAAGCTGATACTCTGAGTTTAACTCAAGGAGGAATGACTGCAGGGAGCACCACATCAGAGT
CAAGCTGTGAATCAGTTAGACTTTGCTGTGCAGTCTTGGTTGAGAGACTGGGACCTCTAAAGGAAACGTTGCAGGGGCAAATGGGTTCCGTAACATGGGA
TGCGCTCATTTGCAAGGCATATATGGAATCACTGAATTTATCAGCATCTTCACGTTACATCCCTGACTTTACTTCGATGCACTACTTAAACTATGGCGCT
GCAGTAAGTGAGGTAGAGGTAAACCTTCTGACAGGGGAAACAACTATTTTGAGATCAGATATTATATACGATTGTGGACAAAGTCTCAACCCTGCGGTGG
ATTTAGGACAGATTGAAGGAGCCTTTGTCCAAGGGATTGGTTTTTTTATGCTTGAAGAGTACACGACGAATTCTGATGGACTAGTGGTTGCAGACAGCAC
ATGGACATATAAGATCCCTACAATAGACACCATACCAAAACAATTCAATGTGGAAATACACAACAGTGGACATCACCAGAAACGTGTTCTCTCTTCAAAA
GCTTCCGGGGAGCCACCGCTACTCCTTGCAGCATCAGTTCACTGTGCTGCAAGAGCAGCTATAGGAGATGCTAGACAACAGCTTCATTCATGGGGTTGCA
TGGATGAGTCTTACTCAACATTCAACTTGGAGGTCCCTGCCACCATGCCTAAGGTGAAGGAACTTTGTGGGCTGGACAACGTGGAAAGGTACCTGGGGTG
GAAAATGGGTAGAAAGTGA
AA sequence
>Potri.009G153600.1 pacid=42772064 polypeptide=Potri.009G153600.1.p locus=Potri.009G153600 ID=Potri.009G153600.1.v4.1 annot-version=v4.1
MEEKQRETGRGSLVFAVNGQRFEVSSRLDPSTTLLEFLRTRTSFKSVKLGCGEGGCGACIVLLSKYDPVRDQVEDFTVSSCLTLLCSVNGCSVTTSEGLG
NSKDGFHPIHQRFSGFHASQCGFCTPGMCVSLFGALVKAEKNDLREPSPGFSKLTVVEAEKAISGNLCRCTGYRPIADACKSFAADVDIEDLGLNSFWKK
EESREAKMSRLPLYDHNHEICTFPEFLKREIKSSLLLDSERYSWCTPATVEELQSLLKSIDADCKTRMKLVVGNTGMGYYKDLEHHDRYIDLGCVLELSS
IRRDEEGIEIGAAVTISKTIEALKEEINSEFNSECKIVFKRIALHMEKIASEFVRNTGSVGGNLVMAQRKHFPSDIATILLAAGAFVHILTGTLHEKLTL
DEFLERPPLDSKSVLLNIKIPNYAASKNISSEMDSKLLFETYRAAPRPLGNALPYLNAAFLSEVSCLKSSGSAVLNKCRVVFGAYGTKHAIRAKEVEKFL
SGKILTIGVLYEAVKLVKANVVPEDGTPSPAYRSSLAAGYLFDFLYPLIDINSKISGVWSDEYCNTSLFKDAKIKQKYSQLDHVQLPTLLSSSEQVLELN
NDHHPVGQPTKKVGAALQASGEAVFVDDIPSPTNCLHGAFIHSMKPYARVKDIKFKSKLLPDGVSGLISVRDIPEGGENRGCTTSFGTESLFADELTQYA
GERLAFVVADTQKHADIASSLVEVDYDIENLEPPILTVEEAIKRSSLLEVPLLLYPKQVGDISKGLAEADHKILSAKIKLGSQYHFYMETQTALAIPDEN
NCMVVYSSTQCPEYAHVNIAKCLGIPEHNVRVITRRVGGGFGGKAMKAIPVATACALAAHKFRRPVRTYLNRKTDMIMAGGRHPMEITYNVGFKSNGKVT
ALQLDILINAGISFDISPVMPETILSGLKKYDWGALSFDIKVCKTNHSSKTAMRAPGEVQGSYIAETVIEHVASTLSMDVDSVRNINFHRYDSLKLFYDV
ASGDSVEYTLTSIWNKLAESSSFKQRVEIIKEFNRCKVWKKRGISRVPIVHQVFVGPTPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIKC
DGVENLLDKVRVIQADTLSLTQGGMTAGSTTSESSCESVRLCCAVLVERLGPLKETLQGQMGSVTWDALICKAYMESLNLSASSRYIPDFTSMHYLNYGA
AVSEVEVNLLTGETTILRSDIIYDCGQSLNPAVDLGQIEGAFVQGIGFFMLEEYTTNSDGLVVADSTWTYKIPTIDTIPKQFNVEIHNSGHHQKRVLSSK
ASGEPPLLLAASVHCAARAAIGDARQQLHSWGCMDESYSTFNLEVPATMPKVKELCGLDNVERYLGWKMGRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G43600 AtAO3, atAO-2, ... Arabidopsis thaliana aldehyde ... Potri.009G153600
[exp]
0 1
AT1G75250 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-... Potri.002G188100
[exp]
1.73 0.8740
AT3G46900 COPT2 copper transporter 2 (.1) Potri.006G093200
[exp]
4.89 0.8719
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Potri.001G265900
[exp]
5.47 0.8261
AT2G26040 RCAR14, PYL2 regulatory components of ABA r... Potri.006G230600
[exp]
6.92 0.8645
AT2G39710 Eukaryotic aspartyl protease f... Potri.008G058000
[exp]
14.69 0.8244
AT5G24270 ATSOS3, CBL4, S... CALCINEURIN B-LIKE PROTEIN 4, ... Potri.015G013100
[exp]
18.16 0.8410
AT1G12940 ATNRT2.5 nitrate transporter2.5 (.1) Potri.015G081300
[exp]
19.02 0.8760 PtNrt2-6,Pt-NRT2.2
AT5G50400 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE AC... Potri.015G095900
[exp]
21.07 0.8243 Pt-PPD3.1
AT4G24020 NLP7 NIN like protein 7 (.1) Potri.001G087900
[exp]
26.38 0.8397
AT5G57850 D-aminoacid aminotransferase-l... Potri.018G039000
[exp]
27.65 0.8158

Potri.009G153600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.