Plant FIBer expression Database

Potri.009G153700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53742 50 / 2e-08 Protein of unknown function (DUF1278) (.1)
AT5G54062 50 / 7e-08 unknown protein
AT4G35165 46 / 5e-07 Protein of unknown function (DUF1278) (.1)
AT2G27315 44 / 4e-06 Protein of unknown function (DUF1278) (.1)
AT2G14378 41 / 3e-05 Protein of unknown function (DUF1278) (.1)
AT5G48210 40 / 5e-05 Protein of unknown function (DUF1278) (.1)
AT3G48675 40 / 9e-05 Protein of unknown function (DUF1278) (.1)
AT5G52965 39 / 0.0001 Protein of unknown function (DUF1278) (.1)
AT5G52975 39 / 0.0003 Protein of unknown function (DUF1278) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G153500
[exp]
246 / 2e-85 AT5G53742 50 / 8e-09 Protein of unknown function (DUF1278) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0482 Prolamin PF05617 Prolamin_like Prolamin-like
Representative CDS sequence
>Potri.009G153700.1 pacid=42770944 polypeptide=Potri.009G153700.1.p locus=Potri.009G153700 ID=Potri.009G153700.1.v4.1 annot-version=v4.1
ATGGCATCCTCTACCCTTCCATCACACTTAGCTGGTCCACGTCTATCTTCACCCAAGATGGTTCAAGCTACCATGACATGCTCGATTGTATTCACGCTAG
CTTTGGGGTTCATGGTGGTTGCCTCAGGTTTAGCGGCAGCTCCTGCAACACCATTTTTCGGTCGGAGCCCTGTAGAAATTCAAGATTGCTTGGCCACCAT
CAAGGCGCACGCAGATATTTGCTTGCATGAGGTTGCATCCTTGGTGCTGACCTTTCAAAAGAACTTAGTCGGCCCTAAATGTTGCAGTGTCTTGGCTGTA
ATTGATGACAAGTGCAAGCCTAAAGGATTTAGTTTTGATCCTTTCTTGCCTCCATTGTGGATCAGGAAACGCTGTGCTTCACTATTATCTGCTCCAAGTC
CTGAACCAGTCGTGCCAAGTTCTACTTCATAA
AA sequence
>Potri.009G153700.1 pacid=42770944 polypeptide=Potri.009G153700.1.p locus=Potri.009G153700 ID=Potri.009G153700.1.v4.1 annot-version=v4.1
MASSTLPSHLAGPRLSSPKMVQATMTCSIVFTLALGFMVVASGLAAAPATPFFGRSPVEIQDCLATIKAHADICLHEVASLVLTFQKNLVGPKCCSVLAV
IDDKCKPKGFSFDPFLPPLWIRKRCASLLSAPSPEPVVPSSTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53742 Protein of unknown function (D... Potri.009G153700
[exp]
0 1
Potri.012G125400
[exp]
10.58 0.8968
AT3G50700 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1... Potri.001G069948
[exp]
11.22 0.8991
AT3G03450 GRAS RGL2 RGA-like 2 (.1) Potri.010G143500
[exp]
12.84 0.8980
AT5G10530 Concanavalin A-like lectin pro... Potri.001G283700
[exp]
13.41 0.8922
AT2G38310 RCAR10, PYL4 regulatory components of ABA r... Potri.008G073400
[exp]
15.96 0.8922
AT5G10530 Concanavalin A-like lectin pro... Potri.001G283866
[exp]
22.44 0.8847
AT4G20860 FAD-binding Berberine family p... Potri.019G063400
[exp]
22.62 0.8435
AT1G75130 CYP721A1 "cytochrome P450, family 721, ... Potri.014G180500
[exp]
22.97 0.8756
AT5G10530 Concanavalin A-like lectin pro... Potri.001G283208
[exp]
23.87 0.8829
AT4G10780 LRR and NB-ARC domains-contain... Potri.001G405025
[exp]
27.23 0.8919

Potri.009G153700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.