Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 936 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 851 / 0 Glycosyl hydrolase family protein (.1) AT5G20940 834 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 657 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 647 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 642 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 632 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 626 / 0 Glycosyl hydrolase family protein (.1.2) AT5G49360 119 / 8e-28 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G64570 116 / 6e-27 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G037400 [exp] 941 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 934 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 919 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 877 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 656 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 346 / 1e-115 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 284 / 8e-93 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 258 / 7e-82 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 244 / 4e-77 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013390 [exp] 952 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 939 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 938 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 868 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 838 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010657 [exp] 837 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10022413 [exp] 829 / 0 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023604 [exp] 825 / 0 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 811 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010656 [exp] 794 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G153900.5 pacid=42772238 polypeptide=Potri.009G153900.5.p locus=Potri.009G153900 ID=Potri.009G153900.5.v4.1 annot-version=v4.1 ATGGGGAGATTGTCAAGACCTATTTTGGGATTTCTATTATTATGCTGCTTGATAGTAGCAGGTGAAGCAGAATACCTGAAATACAAAGACCCCAAGATGC CAATAGGTGCAAGAATCAAAGACTTGATGAAAAGAATGACATTAGAAGAAAAGATTGGCCAAATGGTGCAGATCGAGCGCACTGTTGCCACTCCAGATGT CATGAAGCAGTATTTCATTGGGAGTGTGCTGAGTGGTGGAGGGAGTGTGCCAGGACCAAAGGCCTCAGCAGAGGCTTGGGTGAACTTGGTTAATGGGATC CAAAAGGCGTCTTTATCAACCCGTCTTGGAATTCCTATGATTTATGGGATTGATGCTGTTCATGGCCATAGCAATGTCTACAATGCCACCATTTTTCCTC ACAATGTTGGGCTTGGAGTGACCAGGGATCCTCAGCTAGTCAAAAAGATTGGTGAAGCAACTGCTCTTGAAGTTAGAGCTACAGGAATCCCTTATGCCTT TGCTCCGTGCATCGCGGTTTGCAGGGATCCAAGATGGGGTCGCTGCTATGAAAGCTATAGTGAGGATCATAGGATTGTTCAGTTAATGACTGAGATCATA CCTGGTTTACAAGGAGAGTTACCTGCCAATTCCAAAAAGGGTGTTCCCTTTGTTGCTCCTGGAAATACCAAGGTGGCGGCCTGTGCTAAGCACTTCGTGG GAGATGGTGGCACAACAAAGGGCATTGATGAGAACAATACTGTAATCAGTATGAATGGATTGCTCAATATTCACATGCCAGCATATTATAATGCCATCAG CAAGGGTGTTGCAACAGTTATGGTGTCCTACTCGAGCTGGAATGGGAAGAGGATGCATATTAATCGTGATCTTGTTACCGGATTCCTGAAGAACAAGATG AAGTTCAGGGGATTCGTGATATCAGACTGGCAGGGTATTGACAGGGTTACCTCTCCTCCACATGCTAATTATTCCTCTTCTGTGCATGCAGGAGTTGATG CTGGAATTGACATGATTATGGTTCCATTTAACTTCACAGAGTTCATTGATGATCTAACTTATCAAGTGAAAAATAACATTATCCCCATGAGCAGGATTAA TGATGCCGTACAAAGAATTTTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAAACCATTGGCTGATCTCAGCATGGCCAACCAACTTGGCAGTCAGGAA CATAGAGAATTAGCGAGAGAAGCTGTGAGGAAATCACTTGTTCTGCTAAAGAATGGCAAGTACAGTACTGCTAAGCCATTTCTACCACTTCCTAAGAAAG CGCCAAAGATACTAATTGCAGGAAGCCATGCTGACAACTTGGGCTACCAATGTGGAGGCTGGACAATCACATGGCAGGGTCTTGGTGGCAATGATCTCAC AACTGGTACCACAATCCTCAATGCAGTGAAGAATACAGTTGATCCTACCACCCAAGTCGTCTACAATGAGAATCCAGATTCAAACTTTGTCAAATCCAAC AAATTCTCGTATGCTATTGTTGTCGTTGGTGAGCCACCATATGCTGAAATGTATGGCGATAGCTCCAATCTAACTATATCTGAACCTGGCCCTAGTACCA TCAACAATGTGTGTGGAGCTGTCAAATGTGTCGTCATCGTTATATCTGGCCGCCCCGTTGTGATCCAGCCCTATCTTGAAAAAATAGATGCTCTTGTTGC TGCTTGGCTTCCAGGAACAGAAGGCCAAGGTGTTGTTGACAATCTTTTTGGTGACTATGGGTTCACTGGCAAGCTTGCACGAACATGGTTCAAGACAGTT GACCAGCTTCCAATGAACGTTGGCGATCCACATTATGATCCTCTATTTCCATTTGGGTTTGGTATCACAACTAAACCTGCCAAAAACTAG
AA sequence Show only first row Show all	>Potri.009G153900.5 pacid=42772238 polypeptide=Potri.009G153900.5.p locus=Potri.009G153900 ID=Potri.009G153900.5.v4.1 annot-version=v4.1 MGRLSRPILGFLLLCCLIVAGEAEYLKYKDPKMPIGARIKDLMKRMTLEEKIGQMVQIERTVATPDVMKQYFIGSVLSGGGSVPGPKASAEAWVNLVNGI QKASLSTRLGIPMIYGIDAVHGHSNVYNATIFPHNVGLGVTRDPQLVKKIGEATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDHRIVQLMTEII PGLQGELPANSKKGVPFVAPGNTKVAACAKHFVGDGGTTKGIDENNTVISMNGLLNIHMPAYYNAISKGVATVMVSYSSWNGKRMHINRDLVTGFLKNKM KFRGFVISDWQGIDRVTSPPHANYSSSVHAGVDAGIDMIMVPFNFTEFIDDLTYQVKNNIIPMSRINDAVQRILRVKFVMGLFEKPLADLSMANQLGSQE HRELAREAVRKSLVLLKNGKYSTAKPFLPLPKKAPKILIAGSHADNLGYQCGGWTITWQGLGGNDLTTGTTILNAVKNTVDPTTQVVYNENPDSNFVKSN KFSYAIVVVGEPPYAEMYGDSSNLTISEPGPSTINNVCGAVKCVVIVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVVDNLFGDYGFTGKLARTWFKTV DQLPMNVGDPHYDPLFPFGFGITTKPAKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20950			Glycosyl hydrolase family prot...		Potri.009G153900 [exp]	0	1
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.010G094100 [exp]	4.79	0.9001
AT1G48440			B-cell receptor-associated 31-...		Potri.015G030801 [exp]	10.00	0.8948
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.003G212700 [exp]	10.19	0.8715	Pt-MOD1.2
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.005G003400 [exp]	11.13	0.8538
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077000 [exp]	16.43	0.8993	UBQ1.1
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	17.66	0.8922
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.001G210900 [exp]	21.00	0.8978
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.019G084900 [exp]	23.81	0.8893
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	26.22	0.8971
AT1G76400			Ribophorin I (.1)		Potri.002G006600 [exp]	28.28	0.8905

Compare expression of checked genes

Potri.009G153900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.