Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16130 424 / 2e-142 WAKL2 wall associated kinase-like 2 (.1) AT1G79680 421 / 6e-141 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G16150 419 / 3e-140 WAKL4 wall associated kinase-like 4 (.1) AT1G79670 410 / 1e-137 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16260 409 / 5e-137 Wall-associated kinase family protein (.1.2) AT1G19390 409 / 3e-136 Wall-associated kinase family protein (.1) AT1G69730 406 / 5e-135 Wall-associated kinase family protein (.1) AT1G16120 397 / 3e-132 WAKL1 wall associated kinase-like 1 (.1) AT1G17910 395 / 5e-131 Wall-associated kinase family protein (.1) AT4G31110 395 / 1e-130 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157201 [exp] 716 / 0 AT1G16260 500 / 4e-167 Wall-associated kinase family protein (.1.2) Potri.003G186100 [exp] 495 / 2e-170 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040000 [exp] 481 / 4e-165 AT1G79670 604 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G185700 [exp] 479 / 1e-164 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185688 [exp] 476 / 2e-163 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039200 [exp] 476 / 1e-162 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039450 [exp] 472 / 3e-161 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G185750 [exp] 471 / 4e-161 AT1G16260 559 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040500 [exp] 471 / 4e-161 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 379 / 1e-125 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 376 / 2e-124 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10004504 [exp] 355 / 1e-116 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 350 / 2e-114 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10038077 [exp] 283 / 5e-88 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013143 [exp] 268 / 1e-87 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10014387 [exp] 257 / 2e-79 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10013385 [exp] 252 / 2e-76 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10019657 [exp] 241 / 8e-73 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 241 / 2e-72 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G154300.2 pacid=42772212 polypeptide=Potri.009G154300.2.p locus=Potri.009G154300 ID=Potri.009G154300.2.v4.1 annot-version=v4.1 ATGCATGGTGATGGCAAGAGAGGTTGCCTTGGGTTTCGCATCATCACAATTATTATTGCAGCTGTTGTTGGAGTTGTTGGAGTGTTGTTACTGGTTAGTG GTAGCTGGTGGCTATACAAAACCATGGAGAAAAGGAAGAGCATCAAACTGAAACAGAAGTTTTTCAGACAGAATGGTGGTCTACTGTTACAGCAACATTT ATCCTCAAGTGATCAAGGTGGTATTTCCAAAACCAAAGTATTTAGCTCAGAGGAGTTGGAAACTGCCACAGATGGTTTCAATGTGAATAGGATACTTGGT CAAGGTGGCCAAGGTACCGTGTACAAAGGGATGCTAGCAGATGGAGTAATTGTTGCGGTCAAAAGGTCCACAATGGTGGGTGAAGAAAACCTTGAAGGAT TCATCAACGAGGTCTGTATTCTTTCACAAATCAACCAAAGAAATATAGTCAGGCTACTTGGTTGCTGTTTGGAGGCAGAAGTTCCTCTTTTAGTTTATGA ATTTATTCCTAATGGAACTCTTTCCGAGTATCTCCTTCGCCAAAACGAGGAGTTCCCTTTATCATGGGAAATGAGATTACAGATTGCTGCTGAAACTGCC GGAGCACTTTGCTATCTTCACTCAGCAGCTTCCATTCCAATTTATCATCGAGATATAAAGTCCACCAACATACTCTTAGATCACAAGTATCGAGCAAAGA TTGCTGATTTCGGGACTTCAAGATCACTCTCCGTTTATCAAACTCATTTGACGACTAGTGTGCAAGGCACCTATGGTTACTTGGACCCAGAATACTTTTG GTCCAGTCAGTATACAGATAAGAGTGATGTTTATAGTTTTGGAGTAGTTCTTGCTGAGCTCTTAACTGGACAAAAAGCAATTCTTACAAACGAGTCACAA GAACGCAAAAACTTGGCTGCACATTTTGTTCTTTTGATGGAAGAGAACAGAATTTTAGATATTGTTGATGCTCAAATTAAGGAGCACTGCCCCAAGGAGG ATGTCATCTGTGTAGCTAATATTGCAATGAGATGCTTGAATTTGAATGGAAAAAAGCGACCGACAATGAAACAAGTCACATCAGAGTTGGAGAGGATCAT TCAATTGTCACAAAAGAAGAACGTTCAACAAAATAACGAAGAAGCTGAGAGCATCACGGCTGAAGTAGTCAGTGCGTGGGATGATGCTTCTACATCAATT ACTTGCAGCAGTTTTCAAGTTGATCAGGCTCTATCATCATCTGACGTCGAACCTTTGGTCCCTTTCAAGACTTGGTGA
AA sequence Show only first row Show all	>Potri.009G154300.2 pacid=42772212 polypeptide=Potri.009G154300.2.p locus=Potri.009G154300 ID=Potri.009G154300.2.v4.1 annot-version=v4.1 MHGDGKRGCLGFRIITIIIAAVVGVVGVLLLVSGSWWLYKTMEKRKSIKLKQKFFRQNGGLLLQQHLSSSDQGGISKTKVFSSEELETATDGFNVNRILG QGGQGTVYKGMLADGVIVAVKRSTMVGEENLEGFINEVCILSQINQRNIVRLLGCCLEAEVPLLVYEFIPNGTLSEYLLRQNEEFPLSWEMRLQIAAETA GALCYLHSAASIPIYHRDIKSTNILLDHKYRAKIADFGTSRSLSVYQTHLTTSVQGTYGYLDPEYFWSSQYTDKSDVYSFGVVLAELLTGQKAILTNESQ ERKNLAAHFVLLMEENRILDIVDAQIKEHCPKEDVICVANIAMRCLNLNGKKRPTMKQVTSELERIIQLSQKKNVQQNNEEAESITAEVVSAWDDASTSI TCSSFQVDQALSSSDVEPLVPFKTW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.009G154300 [exp]	0	1
AT1G48780			unknown protein		Potri.012G055300 [exp]	1.41	0.9541
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G155050 [exp]	3.00	0.9447
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	6.70	0.9162
AT5G42220			Ubiquitin-like superfamily pro...		Potri.002G013500 [exp]	14.49	0.9122
					Potri.017G022262 [exp]	14.79	0.8461
AT1G21280			unknown protein		Potri.001G247404 [exp]	15.42	0.9157
AT5G03990			unknown protein		Potri.006G045900 [exp]	17.08	0.9407
AT3G24255			RNA-directed DNA polymerase (r...		Potri.006G175124 [exp]	21.49	0.9144
AT1G05790			lipase class 3 family protein ...		Potri.002G231501 [exp]	22.44	0.8847
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.008G140800 [exp]	24.37	0.8942

Compare expression of checked genes

Potri.009G154300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.