Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TTN8.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27170 1665 / 0 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT3G47460 168 / 5e-42 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 123 / 5e-28 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT5G48600 100 / 3e-21 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT3G54670 66 / 1e-10 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G15920 48 / 6e-05 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108400 [exp] 173 / 1e-43 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.001G125000 [exp] 167 / 1e-41 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G154550 [exp] 115 / 8e-31 AT2G27170 91 / 4e-23 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.017G083200 [exp] 84 / 4e-16 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.005G224900 [exp] 69 / 3e-11 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.001G262600 [exp] 44 / 0.0009 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036169 [exp] 1462 / 0 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10017012 [exp] 150 / 4e-40 AT3G26770 139 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005240 [exp] 132 / 1e-30 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10030681 [exp] 114 / 3e-25 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10027215 [exp] 82 / 2e-15 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10021268 [exp] 66 / 2e-10 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 66 / 2e-10 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10024895 [exp] 66 / 2e-10 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 60 / 3e-10 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013582 [exp] 57 / 2e-08 AT3G54670 292 / 2e-91 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06470 [poplar] [flax] SMC_hinge SMC proteins Flexible Hinge Domain CL0023 [poplar] [flax] P-loop_NTPase PF13304 [poplar] [flax] AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system CL0023 [poplar] [flax] P-loop_NTPase PF13476 [poplar] [flax] AAA_23 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.009G155200.5 pacid=42772328 polypeptide=Potri.009G155200.5.p locus=Potri.009G155200 ID=Potri.009G155200.5.v4.1 annot-version=v4.1 ATGCATATAAAGCAGGTGATAATCGAGGGTTTTAAGAGCTATCGAGAACAGATTGCAACCGAGCCTTTCAGTCCGAAGGTTAATTGTGTTGTTGGTGCTA ATGGATCTGGCAAGACAAACTTTTTCCATGCCATTCGTTTTGTATTGAGTGATCTCTTCCAAAACCTGCGCAATGATGACAGGCATCAATTACTCCATGA AGGTGCAGGCCATCAAGTTTTATCTGCTTTTGTGGAGATTGTGTTTGATAATTCTGACAATCGCATCCCGGTTGATAAGGAGGAAGTGCGTCTTCGAAGA ACAATCGGTTTGAAAAAGGATGAGTATTTTTTGGATGGAAAGCACATTACGAAAACTGAAGTTATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCAA ATCCATACTATGTAGTGCAGCAAGGAAAGATAGCATCGTTGACATTGATGAAAGACTCTGAACGTCTCGATTTATTGAAAGAAATCGGTGGCACCCGAGT GTATGAAGAGAGACGCCGTGAGAGTTTGAAAATTATGCAGGAAACAGGGAACAAAAGAAAGCAGATAATTCAAGTTGTTCAGTACTTGGATGAGAGGCTG AAGGAACTGGATGAAGAGAAAGAGGAGCTGAGAAAATATCAGCAGCTTGACAAGCAGCGAAAATCTCTAGAATATACTATTTATGATAAGGAACTCCATG ATGCTCGACAGAAATTGTTGGAGGTTGAGGATGCTCGCAGCAAGGTTTCTGAAAAATCAGCGAAGATGTATAACGATGTGTTGAATGCTCATGAAGAGTC CAAGGACTTGGAGAAGGTGCTCAAAGATCTTACAAAAGAAGTTCAAGCATTGAACAAAGAGAAAGAGGCAGCAGAGAAACAACAAACAGAAGCAATAAAG AAGCAGACAGAGCTTGAGCTTGATGTGAAAGATATGCTAGAGAGATTTTCTGGAAATATCCAAGCCAAAGATGATGCCATGAAGCAACTTCATATTCTAC AGAAAGAAATACAGGATTCTCAGAAGGAGCTCAACAAAATCAGTCCCATCTATGAAGAACACCTTTCAAAGGAAAAGGATATCACCAAGAGAATAATGGA GCGTGAAAAGCAGCTTAGCATACTTTATCAAAAACAAGGTCGTGCAACCCAGTTTTCCAGCAAAGCTGCTCGTGACAAATGGCTTCAAAAGGAAATTGAT GATTTACAACGAGTTCTTTCTTCAAATTTGGCTCAGGAGCAAAAACTCCACGAAGAAATTTATAGGCTGAATGCAGACTTAAAAGAGCGAGATGCCTACA TTGAGAGTCGCAAAGCTGAAATTGCAACCTTAGACTCTCTCATTTTCCAGTCACGTGAAGGATTCAATAGTCATAAAGCACAGAGAGACAAGCTGCAAGA TGAGCGGAAATCATTGTGGAAAAAGGAAAGTGAACTTTCTGCTGAAATTGATAAGCTAAGAACAGAAGTTGACAAGGCAGAGAAGAGCCTGGATCATGCA ACTCCTGGTGATGTGAGGAGAGGGCTCAATTCTATTCGGCGTATCTGCAGAGAGTACAAAATTAGTGGAGTTTTCGGTCCAATAATAGAGCTGCTTGATT GTGATGAGAAATATTTTACTGCTGTTGAAGTTACAGCTGGAAACAGCTTATTTCATGTTGTGGTTGAGGATGATAACATATCAACTCAGATAATTAGGCA CCTTAATGCATTGAAAGGAGGACGAGTTACTTTTATTCCACTGAACAGGGTAAAGGCACCTCGAGTAACTTATCCACAGAGTTCTGATGTGGTACCTTTG CTAAAGAAGTTGAAGTTCTCTCCCAATTTTACGCCAGCATTTGCTCAGGTATTTGCTAGAACTGTGATCTGTCGAGATTTGGATGTGGCCACAAGAGTTG CCCGAACTGATGGTTTGGACTGCATAACTGTGGATGGTGATCAAGTAAGCAAGAAAGGTGGTATGACAGGGGGCTTTTATGACCATCGGCGCTCAAAGTT GAAGTTTATGAACATGATTATGCAGAATACAAAATCTATTAACATTAAGGAAGAAGAACTTGAAAAAGTCAGATTTATGCTACAAGATATAGACCAGAGA ATAACTGAACGCGTCACTGAGCAGCAGAAAATTGATGCCAAGCGGGCTCATGATAAATCAGAGTTGGAACAGCTTAAGCAGGACATAGCTAATGCTAATA AGCAGAAACAATTCATTTCCACGGCTCTTGAAAATAAGGAAAAATCACTTGCAGATGTCCGGAATCAAATAGAACAGCTTAATGCCAGTATGGTCATGAA ACAAGCTGAGATGGGCACAGAGCTCATTGATCACTTAACACCAGAGGAAAAATATGAACTATCCCAACTCAACCCTGAAATAAAAGACCTTAAAGAGAAG CTTATTACCTGTAGAACAGATCGCATCGAGACTGAAACAAGAAAAGCGGAACTAGAGACTAATCTTACAACTAACCTGAAACGACGGAAGCAAGAGTTGG AAGCCATAATATCAACGGTTGACTCTGACACGTTACATGGTGAAGATGAATTGAAGAGGCAGGAACTGAACGATGCTAAATCACTGGCTGAAGTCACAAC ACTGGAACTCAAAAGAGTTTCTGACAAGATAGATAGACTAAAGGAGGAACTAAAGGAGAAAAAAGATAAAAAGACAGAACTAAAGGTTTTGGAAGACAGA TATGAAAAAACACTTCAAGATGAAGCAAAAGAACTGGAACAGCTATTGAGTAAACGAAGTATTTTTCTTGCTAAACAGGAGGAATACTCTAACAAAATTA GGGAACTGGGTCCTTTGTCATCAGATGCTTTTGAAACGTATAAGCGGAGAGGCGTGAAAGATTTGCATAAAATGCTTCATAGGTGCAATGAGCAACTTCA GCAGTTCAGCCATGTAAACAAGAAGGCACTAGATCAATATGTAAACTTCACAGAGCAGCGGGAGGAACTTCAGAAAAGGCAAGCTGAACTGGAAGCAGGT GACGAGAAAATAAGAGAACTTATATCTGCTCTAGATCAGCGGAAGGATGAATCAATAGAACGCACTTTCAAGGGTGTTGCTCGACACTTTCGCGAAGTAT TCTCTGAACTTGTGCAGGGTGGTCATGGTCATCTGGTCATGATGAAGAAAAAGGATGGTGATCATGGGGATGATGATTATGATGATGACGGACCTCGTGA GGCAGATTTGGAGGGAAGGGTTGAGAAATACATAGGTGTGAAAGTGAAGGTTTCATTTACAGGGCAAGGGGAAACACAATCAATGAAGCAGTTATCAGGG GGTCAGAAAACTGTAGTAGCCCTGACATTGATATTTGCCATCCAACGATGTGATCCTGCTCCTTTTTATCTTTTTGATGAGATAGACGCAGCACTGGATC CCCAGTACAGGACTGCTGTTGGAAACATGATTCGTCGCCTGGCTGATATGGCCAACACACAATTTATAACCACCACTTTCAGGCCAGAACTTGTGAAGGT TGCTGACAAGTTATATGGGGTGACACACAAAAACAGGGTGAGCCGTGTCAATGTTGTCTCCAAGGAAGATGCGATAGATTTTATCGAGCACGACCAATCT CATAATGTCGAATAA
AA sequence Show only first row Show all	>Potri.009G155200.5 pacid=42772328 polypeptide=Potri.009G155200.5.p locus=Potri.009G155200 ID=Potri.009G155200.5.v4.1 annot-version=v4.1 MHIKQVIIEGFKSYREQIATEPFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRNDDRHQLLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRR TIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIQVVQYLDERL KELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVEDARSKVSEKSAKMYNDVLNAHEESKDLEKVLKDLTKEVQALNKEKEAAEKQQTEAIK KQTELELDVKDMLERFSGNIQAKDDAMKQLHILQKEIQDSQKELNKISPIYEEHLSKEKDITKRIMEREKQLSILYQKQGRATQFSSKAARDKWLQKEID DLQRVLSSNLAQEQKLHEEIYRLNADLKERDAYIESRKAEIATLDSLIFQSREGFNSHKAQRDKLQDERKSLWKKESELSAEIDKLRTEVDKAEKSLDHA TPGDVRRGLNSIRRICREYKISGVFGPIIELLDCDEKYFTAVEVTAGNSLFHVVVEDDNISTQIIRHLNALKGGRVTFIPLNRVKAPRVTYPQSSDVVPL LKKLKFSPNFTPAFAQVFARTVICRDLDVATRVARTDGLDCITVDGDQVSKKGGMTGGFYDHRRSKLKFMNMIMQNTKSINIKEEELEKVRFMLQDIDQR ITERVTEQQKIDAKRAHDKSELEQLKQDIANANKQKQFISTALENKEKSLADVRNQIEQLNASMVMKQAEMGTELIDHLTPEEKYELSQLNPEIKDLKEK LITCRTDRIETETRKAELETNLTTNLKRRKQELEAIISTVDSDTLHGEDELKRQELNDAKSLAEVTTLELKRVSDKIDRLKEELKEKKDKKTELKVLEDR YEKTLQDEAKELEQLLSKRSIFLAKQEEYSNKIRELGPLSSDAFETYKRRGVKDLHKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELEAG DEKIRELISALDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDYDDDGPREADLEGRVEKYIGVKVKVSFTGQGETQSMKQLSG GQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMANTQFITTTFRPELVKVADKLYGVTHKNRVSRVNVVSKEDAIDFIEHDQS HNVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	0	1	TTN8.2
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	1.00	0.9475	CPC902,TTN8.3
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	1.41	0.9383
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	2.44	0.9267
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	3.46	0.9146
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	4.47	0.9146
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	4.89	0.9008
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	5.65	0.9049
AT3G22380		TIC	time for coffee (.1.2)		Potri.008G151200 [exp]	5.83	0.8865
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	6.00	0.9048
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	6.63	0.9009

Compare expression of checked genes

Potri.009G155200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.