Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44020 143 / 3e-44 thylakoid lumenal P17.1 protein (.1) AT1G75690 41 / 9e-05 LQY1 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023600 [exp] 43 / 2e-05 AT1G75690 193 / 4e-64 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.005G237800 [exp] 43 / 2e-05 AT1G75690 182 / 8e-60 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.010G243700 [exp] 40 / 0.0004 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.006G095400 [exp] 39 / 0.0006 AT2G38000 531 / 0.0 chaperone protein dnaJ-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019382 [exp] 151 / 3e-47 AT3G44020 136 / 2e-41 thylakoid lumenal P17.1 protein (.1) Lus10036169 [exp] 67 / 2e-13 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10002040 [exp] 49 / 2e-07 AT1G75690 203 / 5e-68 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G155700.1 pacid=42772260 polypeptide=Potri.009G155700.1.p locus=Potri.009G155700 ID=Potri.009G155700.1.v4.1 annot-version=v4.1 ATGGCTCCACTCTCTTCTTGCTCTTCTCTCCACCCTCTCTCTTCTCTCTCTCCTCCTTCCTCTTCTTCTTCAAAAACACGTCACTTTCTTCCAAAACTAC CCCCTTCAAAGCCTGAAATCCCCTCTCTCCCCCGCTTCTCCTTTATCAACCATAATAGCAACTATAAACTCTATCACCACCAAGCCACACCAAGCCTTCT TTTTCAGCCACAATTTTTGCTCAGTGGCTTGGATACTCCTTTGGATACCCAAACTGCCCTCTCTATTATCAGTGTCTTTGCTGCCATTGCTCTTTCTCTG TTCCTGGGCCTGAAGGGGGATCCTGTGCCTTGTGAGAGGTGTGCAGGAAATGGCGGCACAAAATGTGTGTTTTGCAATGATGGCAAGATGAAGCAAGAAA CAGGCTTGATGGATTGCAGGGTGTGCAAGGGTGCAGGATTGATACTCTGCAAGAAGTGTGCAGGTTCTGGCTATTCCAAACGCTTATGA
AA sequence Show only first row Show all	>Potri.009G155700.1 pacid=42772260 polypeptide=Potri.009G155700.1.p locus=Potri.009G155700 ID=Potri.009G155700.1.v4.1 annot-version=v4.1 MAPLSSCSSLHPLSSLSPPSSSSSKTRHFLPKLPPSKPEIPSLPRFSFINHNSNYKLYHHQATPSLLFQPQFLLSGLDTPLDTQTALSIISVFAAIALSL FLGLKGDPVPCERCAGNGGTKCVFCNDGKMKQETGLMDCRVCKGAGLILCKKCAGSGYSKRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44020			thylakoid lumenal P17.1 protei...		Potri.009G155700 [exp]	0	1
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.002G047100 [exp]	3.00	0.9749
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	7.21	0.9726
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Potri.004G175800 [exp]	9.00	0.9704	Pt-HPR.1
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.014G175600 [exp]	12.48	0.9696	PSAL.2
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.011G057800 [exp]	12.96	0.9546	APE2.1
AT2G26500			cytochrome b6f complex subunit...		Potri.004G147300 [exp]	13.78	0.9658
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Potri.016G027600 [exp]	14.83	0.9595
AT5G40950		RPL27	ribosomal protein large subuni...		Potri.001G329500 [exp]	15.49	0.9672	Pt-RPL27.5
AT5G17670			alpha/beta-Hydrolases superfam...		Potri.013G070700 [exp]	18.02	0.9587
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Potri.004G053400 [exp]	19.79	0.9659	Pt-CHLI1.1

Compare expression of checked genes

Potri.009G155700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.