Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 310 / 5e-105 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16080 177 / 7e-53 ATCXE17 carboxyesterase 17 (.1) AT5G62180 162 / 2e-47 ATCXE20 carboxyesterase 20 (.1) AT1G68620 162 / 3e-47 alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 160 / 2e-46 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 157 / 2e-45 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 151 / 7e-43 ATCXE18 carboxyesterase 18 (.1) AT3G63010 151 / 7e-43 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 150 / 1e-42 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 149 / 2e-42 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198800 [exp] 402 / 3e-141 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 391 / 5e-137 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G031500 [exp] 220 / 1e-69 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G127600 [exp] 214 / 7e-67 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.004G101400 [exp] 207 / 1e-64 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.008G118400 [exp] 201 / 7e-62 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 200 / 7e-62 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G113700 [exp] 197 / 2e-60 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.003G192650 [exp] 196 / 2e-60 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036168 [exp] 534 / 0 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 386 / 6e-135 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 400 / 1e-127 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015989 [exp] 350 / 8e-121 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 344 / 3e-118 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013376 [exp] 331 / 3e-113 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10016204 [exp] 248 / 7e-81 AT5G06570 260 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10029341 [exp] 238 / 2e-76 AT5G06570 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 215 / 2e-67 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10041632 [exp] 190 / 6e-58 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.009G155800.1 pacid=42771036 polypeptide=Potri.009G155800.1.p locus=Potri.009G155800 ID=Potri.009G155800.1.v4.1 annot-version=v4.1 ATGTCCAACGTAACTACCGGTGCCGCCGCTGCTGAGCAGCCATATGAGGTTGATGAATGCCGTGGAGTGCTTCGCGTGTACAGTGATGGCTCAATCTGGC GTTCTTCTGAACCAAGCTTCAAAGTTCCTGTCCATGATGATGGTTCTGTTGTCTGGAAAGATGCTTTCTTTGACTCCACGCATGATCTCCACCTCCGTCT CTACAAACCAGCTTCCCCCTCTTCCACAAAGCTCCCTATCTTCTACTACATCCATGGTGGTGGCTTTTGCATTGGCTCCCGTGCTTGGCCTAACTGCCAG AATTACTGCTTTAAGCTTGCCTTGGACCTCCAAGCTGTGATAATTTCGCCTGACTATCGCCTGGCTCCAGAGAACCGGCTCCCAGCTGCCATTGAGGATG GTTACATGGCCGTGAAATGGCTCCAAGCACAAGCTATGTCTGAAGAGCCGGACACCTGGTTGACCGATGTTGCTGATTTCAGCAAGGTGTTCATTTCTGG TGATTCCGCTGGTGGGAACATTGCTCATAACCTGGCAGTTCGGTTAGGAGCTGGTTCTCCAGAGTTGGCTCCGGTTCTTGTTAGGGGTTATGTTCTTTTG GCACCCTTTTTTGGTGGGACAGTGAAGAGTAAATCAGAGGCCGAGGGACCGAAAGAAGCATTCCTGAATTGGGAGCTTATCAACAGGTTTTGGAGGCTGT CTATTCCCATAGGAGATACAACTGATCATCCACTGGTGAACCCATTTGGACCACAAAGCCGGAGTCTTGAACCATTGGAACTTGATCCAATCCTGGTAGT AATGGGAGGTAGTGATCTGCTCAAAGATCGAGCCAAGGACTATGCAGAGAGACTCCAAGAATGGGGAAAAGATATCCAGTATGTTGAGTATGAAGGACAG CAACATGGGTTCTTTACCATTAACCCTAACTCCGAACCAGCTACTAAACTGATGCAAATCATCAAAACTTTCATCGTTGAAAAATCCACCTAG
AA sequence Show only first row Show all	>Potri.009G155800.1 pacid=42771036 polypeptide=Potri.009G155800.1.p locus=Potri.009G155800 ID=Potri.009G155800.1.v4.1 annot-version=v4.1 MSNVTTGAAAAEQPYEVDECRGVLRVYSDGSIWRSSEPSFKVPVHDDGSVVWKDAFFDSTHDLHLRLYKPASPSSTKLPIFYYIHGGGFCIGSRAWPNCQ NYCFKLALDLQAVIISPDYRLAPENRLPAAIEDGYMAVKWLQAQAMSEEPDTWLTDVADFSKVFISGDSAGGNIAHNLAVRLGAGSPELAPVLVRGYVLL APFFGGTVKSKSEAEGPKEAFLNWELINRFWRLSIPIGDTTDHPLVNPFGPQSRSLEPLELDPILVVMGGSDLLKDRAKDYAERLQEWGKDIQYVEYEGQ QHGFFTINPNSEPATKLMQIIKTFIVEKST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.009G155800 [exp]	0	1
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.018G050800 [exp]	5.91	0.6241	Pt-MEK1.2
AT2G39110			Protein kinase superfamily pro...		Potri.010G225300 [exp]	11.87	0.6565
AT2G46230			PIN domain-like family protein...		Potri.002G166200 [exp]	12.96	0.6521
AT2G03800		GEK1	GEKO1, D-aminoacyl-tRNA deacyl...		Potri.015G048700 [exp]	16.12	0.5959
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.005G207300 [exp]	17.66	0.6298
AT1G67570			Protein of unknown function (D...		Potri.015G092200 [exp]	29.84	0.5473
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.008G065600 [exp]	36.19	0.6190	MDPIP1.3
AT3G17120			unknown protein		Potri.010G148200 [exp]	45.55	0.5830
					Potri.005G172500 [exp]	46.54	0.5321
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258200 [exp]	50.54	0.5757

Compare expression of checked genes

Potri.009G155800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.