Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44050 1231 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 599 / 0 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 590 / 0 POK1 phragmoplast orienting kinesin 1 (.1) AT4G14150 357 / 3e-103 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G23670 348 / 3e-102 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT3G10180 236 / 4e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G20150 231 / 6e-62 Kinesin motor family protein (.1) AT3G45850 229 / 4e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G63480 215 / 2e-60 ATP binding microtubule motor family protein (.1.2) AT2G28620 224 / 8e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G193700 [exp] 1986 / 0 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 658 / 0 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.002G235500 [exp] 353 / 7e-102 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.014G149000 [exp] 350 / 7e-101 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.001G360200 [exp] 278 / 9e-77 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 231 / 3e-61 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 228 / 7e-61 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G106000 [exp] 228 / 1e-60 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 228 / 1e-60 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008438 [exp] 1352 / 0 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013377 [exp] 1337 / 0 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027934 [exp] 646 / 0 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 638 / 0 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10018341 [exp] 589 / 0 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 585 / 0 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10021969 [exp] 342 / 2e-98 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10016589 [exp] 267 / 3e-73 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10041262 [exp] 256 / 4e-70 AT3G23670 559 / 8e-180 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10018120 [exp] 241 / 5e-65 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.009G156000.1 pacid=42771948 polypeptide=Potri.009G156000.1.p locus=Potri.009G156000 ID=Potri.009G156000.1.v4.1 annot-version=v4.1 ATGCCTTTCTTACTGGATACTGCGAGCGCGATTAAGAGGCGGTTCGGGTTCCAAGACCAGTCCGTCTCGGAATCCGTGCCGTGTACGCCAGATCTACTGA AATCTGTTTCTCGAGATCATCACCTTGCTTCCACTCAATCTGTATTTGCCACGTCAGCAGTCCGGAGAATTAGTGACATGGATGATGATGATCACGGTGG CGCTACAGGCTCAGAGGTGGCCGCGCCGCGTCATGCACAGAGCTTTGAGTTCTCCGAGGATCCTTCCTTCTGGAAGGACCATAACGTGCAGGTTATTATA AGGTTAAGACCGTTGAGTGGTTCGGAAATCTCTGTACAAGGGCATAGCAAGTGCGTTAGGCAAGAAAGTTGTCAGACAATTACCTGGACTGGGCATCCAG AGTCGCGGTTTACTTTCGATCTTGTAGCGGATGAAACTGTTACGCAGGAAAAAATGTTCAAAGTTGCTGGATTACCTATGGTGGACAATTGTATGGGAGG CTACAACAGTTGCATGTTTGCGTATGGCCAAACTGGAAGTGGAAAGACTCATACAATGCTTGGAGACATCGAGGGAGGTACTCGAAGACACAGTGTTAAT TGTGGAATGACACCTAGAGTATTTGAGTATTTGTTTTCAAGAATCCAGAAGGAAAAAGAGGCTCGTAAAGAGGAAAAGATAAAATTTACCTGTAAATGCT CTTTCTTGGAAATATACAATGAACAGATTCTTGATCTCCTGGATCCATCATCTTCCAACTTACAGATAAGAGAAGACGTGAAGAAAGGGATTTATGTGGA TAATCTTAAGGAGATAGAAGTTGCCAGTGCTCGAGATGTGCTTCAACAACTAATTCAGGGCGCAGCAAATAGAAAAGTAGCAGCCACTAATATGAATTGT GCAAGTAGTCGTTCTCATAGTGTATTTACATGCATCATTGAGAGTAAGTGGGAATCCCAAGGTGTAACTCACCATCGGTTTGCTCGGCTTAATCTTGTTG ATTTAGCAGGATCTGAGAGGCAGAAGAGTTCTGGTGCTGAAGGTGAACGTCTTAAGGAAGCTACCAATATTAACAAGTCACTTTCAACATTGGGACTTGT TATTATGAACCTTGTAAGTATATCAAATGGGAAGTCTCTCCATGTTCCTTACAGGGATTCAAAGCTCACATTTTTGCTTCAGGATTCTCTAGGAGGAAAT TCAAAAACTATCATAATTGCTAATATTAGCCCCTCTCTTTGTTGTTCTTTGGAGACGCTTAGCACATTGAAGTTTGCACAACGTGCAAAATTCATCAAAA ACAATGCAATTATCAATGAAGATGCATTGGGAGATGTTATTGTGATGCGAATGCAAATTCAACAACTTAAGAAAGAAGTGTCCAGACTTCGCAGTTTAGT CAATGAGGGTGTTGAAAATCTAGATAACGATACTTCATCCTTAAGCTTTCTTGGATCTCCTGGACAATTTAAGTGGGAAGGGCTTCATGGTTCATCTAGT CCGCTTATGCCTGAAAAAAGGATGTCTCAGAAGAAAGATTATGAAGTTGCCCTTATTGGGGCCTTCAGGCGAGAAAAAGATAAGGACATAGCATTGAAGG CATTAAAAGCTGAAAATCAAGCAGCTATGCAACTGGCCAAACAAAGAGAGGATGAGATAAAAAGCTTAAAAATGATACTACGATTCCGAGAAGCTGGAGT AAAGAGGCTAGAAGCAGTTGCTGCAGGAAAGATTTCGGCTGAAACACACTTGTTGAAAGAAAAGGAGGAACATCTCAAGGAAATTGAAGTTTGGCGAACC CAGGTTGACCGCAACCAAGAAGTCACAAGATTTGCCACAGAAAATTTGCGTCTGAAGGAAGAAATTAGAAGATTAAAGTCATTCTGCGAGGAAGGTGAAA GGGAGATGATGAATGAACAAATCATGGTCTTACAGAATAAGTTACTAGAAGCACTAGATTGGAAACTTATGCATGAAACGGATTCCTTGGCAGTTCAGAA AACTAGCTTAGACATGGAGACAGAAGTTCAGGATGATCTACCGATTTCAATTCAGGAACCAAGATCACCTTGTCAATCTTCAATTAATGAGGAGAACGAG TTCCTCCGCATACAGACTATTCAAAACCAGGCTGAAATTGACTTGCTCCATAAGCAGCTGGAGTTCTGTTTTGAAGAGAAGGATAGACTAGAAAGGCATG TCAATGATCTCATGATGAAACTTGAAGAAGAGAGATCTTATAGAGCTACAAACGAGAGAACAGAGCAACTTGAACTTCCTTTATCAACTGATGCATCAGT TGTCAATGGCAATGACCAAATGGAGCTCAAAACAATGGTTGATGCCATTGCTGCAGCAAGTCAACGAGAAGCTGAAGCTCATGAAAAAGCTATTACATTG TATACGGAGAATAATGAGCTGCAGTTGAAGCTTGAAACATTTATTGTGGCAAATGAAGAGCTACAGTCAAAACTCAAAGCATTAATTGAGGAAAAAAACA GTCTCATTGAAATGTATGAACGGGCAGCTTCAAAAAGTAGCTACAACAATGTGAACGATTCTGAGAGTGAACAAAATGGCATGGAGGTTCGTGATGATGA TAATAGTGCTGAGAGGGGACAAAATGGCATGGAAGTTCATAATAATGACAGTGCTTCTGAACTTGCCAACTTAAGTGAGCTAGAGATGAAAACAGTTGAG AACCTAGAGCAGCAGCGTATGGAATTGCATGAAGAAAATGAAAAGCTGATGGGTTTGTATGAGATAGCTATGCATGAGAGGGATGAACTGAGAAGAAGGC TTTCTTCTTATGAACAGAACAGAGTTGAATCTAGAGGAGAACTTCATTGCCCAGAAAAACACGTGGAAGTTGATGGAGAGAAATGTCTTCAGTCTTGTGC TCCTCCTATTTACCTTGGTACAAAAGTTTCAATGGAGGAAATCCGTGCCCGTTTATTGAACGCGGAGCAAGCTTTTGTTGACTTTGATGAAGTTTTGAGA GAAATTGAAGCAACAGAAGAAGGGCTTCAGCTAAAGCAGGAAGAGTTTAGATCCCTTGAGCTACTTTCTTCTGAAATGCAAGATAAAAAAGCTCTTGTAG ATAAGAAGTTATCGGCACTGAGATATTCTCTATCGAATTTTTCTTCATCGGTCGCTTACTTTGAACAGCGAGAAGTTAGAGCAAAGGCAAGGGTAAATGC TTCAGTGTCTTATTTTAGGAAAAAGAAAGAGGAGTTGGCTCGTCTGCAAGTTTGCAAAGAAGATGCTGAGGCTAACCTGGGAAGGATCCAACAATCTGAA ATTGAATTGAGAAACATCCTAGCAGTTTTGAAATCCAAACTCGAGGAGAAGAATCAGAGACAGGAGAGTGAAAAGGTTCTTTTTGCCATTGATAACATCG AGAAAGTAGACACCTCACAGAGAAATTGGCAATTAGGTGGGAAAGCTACAGAGCTACTGAAGTCCGAGGAAGAGAAAACCAAGCTACAAAGTGAGATGAA GTTGTCCCGAGAAAAGCTTGGTCTTGTAAAAAGAGAATTTGACGATTTGAGTAAGAGATTGGATAAGATAGAGAGTGAAATACAAGCTGTTCAGATGGAT ATACAAAAAGGATCAAAATCCGTGGAGGAAATGGAACTTGCACTTCAAACTGTAATCCATGAGAAGGAAACTCTCCTAGAAATCACCGAGAATGGAATGT CTGAAATTCAGAGTATGATTCTTGAATACCAGCAATGTGTCTTTGATACAGATCTCAAGGAGGCAGAGTTGAAGACACTGGAAGAAGAATTACAGCTGGA GTTCAGAAGAATCGAAGATTTAAGAAAAGTGCGGGCAGCGGCTTCTGAGAAGATGACCAGGCTGTTGCAAAACACAAGCTCCCATTCTTGCTTCGCTGAG AAGATGGAAGAGTAG
AA sequence Show only first row Show all	>Potri.009G156000.1 pacid=42771948 polypeptide=Potri.009G156000.1.p locus=Potri.009G156000 ID=Potri.009G156000.1.v4.1 annot-version=v4.1 MPFLLDTASAIKRRFGFQDQSVSESVPCTPDLLKSVSRDHHLASTQSVFATSAVRRISDMDDDDHGGATGSEVAAPRHAQSFEFSEDPSFWKDHNVQVII RLRPLSGSEISVQGHSKCVRQESCQTITWTGHPESRFTFDLVADETVTQEKMFKVAGLPMVDNCMGGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVN CGMTPRVFEYLFSRIQKEKEARKEEKIKFTCKCSFLEIYNEQILDLLDPSSSNLQIREDVKKGIYVDNLKEIEVASARDVLQQLIQGAANRKVAATNMNC ASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGN SKTIIIANISPSLCCSLETLSTLKFAQRAKFIKNNAIINEDALGDVIVMRMQIQQLKKEVSRLRSLVNEGVENLDNDTSSLSFLGSPGQFKWEGLHGSSS PLMPEKRMSQKKDYEVALIGAFRREKDKDIALKALKAENQAAMQLAKQREDEIKSLKMILRFREAGVKRLEAVAAGKISAETHLLKEKEEHLKEIEVWRT QVDRNQEVTRFATENLRLKEEIRRLKSFCEEGEREMMNEQIMVLQNKLLEALDWKLMHETDSLAVQKTSLDMETEVQDDLPISIQEPRSPCQSSINEENE FLRIQTIQNQAEIDLLHKQLEFCFEEKDRLERHVNDLMMKLEEERSYRATNERTEQLELPLSTDASVVNGNDQMELKTMVDAIAAASQREAEAHEKAITL YTENNELQLKLETFIVANEELQSKLKALIEEKNSLIEMYERAASKSSYNNVNDSESEQNGMEVRDDDNSAERGQNGMEVHNNDSASELANLSELEMKTVE NLEQQRMELHEENEKLMGLYEIAMHERDELRRRLSSYEQNRVESRGELHCPEKHVEVDGEKCLQSCAPPIYLGTKVSMEEIRARLLNAEQAFVDFDEVLR EIEATEEGLQLKQEEFRSLELLSSEMQDKKALVDKKLSALRYSLSNFSSSVAYFEQREVRAKARVNASVSYFRKKKEELARLQVCKEDAEANLGRIQQSE IELRNILAVLKSKLEEKNQRQESEKVLFAIDNIEKVDTSQRNWQLGGKATELLKSEEEKTKLQSEMKLSREKLGLVKREFDDLSKRLDKIESEIQAVQMD IQKGSKSVEEMELALQTVIHEKETLLEITENGMSEIQSMILEYQQCVFDTDLKEAELKTLEEELQLEFRRIEDLRKVRAAASEKMTRLLQNTSSHSCFAE KMEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	0	1
AT3G44050			P-loop containing nucleoside t...		Potri.004G193700 [exp]	1.00	0.9845
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	1.41	0.9794
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	2.00	0.9699
AT3G19050		POK2	phragmoplast orienting kinesin...		Potri.004G145800 [exp]	2.44	0.9742
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.016G050300 [exp]	3.16	0.9548
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	4.24	0.9609	TOP2.2
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	5.47	0.9670	Pt-ATK1.1
AT3G27350			unknown protein		Potri.001G336300 [exp]	5.91	0.9604
AT5G56120			unknown protein		Potri.001G470800 [exp]	10.95	0.9530
AT3G17360		POK1	phragmoplast orienting kinesin...		Potri.010G153000 [exp]	11.40	0.9494

Compare expression of checked genes

Potri.009G156000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.