Plant FIBer expression Database

Potri.009G156400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20990 971 / 0 B73, CNX1, SIR4, CHL6 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001152
[exp]
924 / 0 AT5G20990 899 / 0.0 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
Lus10000717
[exp]
209 / 4e-62 AT5G20990 201 / 4e-59 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00994 MoCF_biosynth Probable molybdopterin binding domain
PF03453 MoeA_N MoeA N-terminal region (domain I and II)
PF03454 MoeA_C MoeA C-terminal region (domain IV)
Representative CDS sequence
>Potri.009G156400.7 pacid=42770750 polypeptide=Potri.009G156400.7.p locus=Potri.009G156400 ID=Potri.009G156400.7.v4.1 annot-version=v4.1
ATGATATCAGCAGAGGAAGCTCTCCAAACCATTCTCAAAGTCGCTCAGCGTCTGCTACCTGTCTCCGTTCCACTTCACGACGCTCTTGGCAAAGTCCTCG
CCGAAGATATTCGCGCCCCCGATCCTCTCCCTCCTTATCCTGCCTCAGTCAAGGATGGATATGCAGTGATAGCATCAGACGGACCCGGAGAATATCCGGT
TATAACAGAATCAAGAGCCGGAAATGATGGACTTGGTGTTACCTTAACTCCTGGAACCGTTGCTTATGTTACTACCGGAGGACCGATACCTGATGGAGCG
GACGCAGTTGTCCAGGTTGAGGATACCAGAAAGGTCAAAGACCCTTTGGTTGAGCGAGTGAAAATAATGGTACAGACTCGCAAAGGCGTTGATATTCGTC
CTGTGGGATGTGACATTGAGAAAGATGTTGTGGTATTAAAATGTGGAGAAAGGTTAGGTGTTTCGGAGATTGGGTTGCTTGCTACTGTTGGTGTAATGAT
GGTGAAGGTATATCCTATGCCTACGATTGCGGTGCTTTCTACTGGAGATGAACTCGTGGAGCCAACAACTGGTGTTCTAAATCGTGGCCAGATTAGGGAC
TCCAACCGTGCTATGTTACTGGCAGCTGCAATACAGCAGCAATGCAAGATTCTTGACCTTGGAATTGCTCGAGATGACAAGGAAGAACTTGAGAGGATCC
TGGATAAAGCCTTTTCTGCTGGGATTCACATTCTTCTGACTTCTGGTGGTGTTTCCATGGGAGACAGGGATTTTGTGAAACCATTGCTCGAAAACAGAGG
GACCGTACATTTTAACAAGGTTTGCATGAAGCCAGGAAAACCTTTGACATTTGCAGAAATCAACTCGAAACCAGCTGACAGTATTGCATCAGGGAAAATT
CTGGCTTTTGGATTGCCTGGAAATCCAGTGAGCTGTCTAGTTTGTTTCCATCTCTTTGTAGTCCCTGCCATCCGCCTTGTTGCTGGATGTGCAAATCCTC
ATCTTCTGAGAGTGCAGGCTTGTCTTCACCAGCCCATAAAGGCAGATCCAGTGCGACCGGAATTTCATCGTGCAATTATTAGATGGAAGGCCAATGATGG
ATCAGGCAATCCTGGATTTGTTGCTGAGAGCACTGGTCATCAAATGAGCAGTCGGCTTTTAAGTATGAAATCAGCTAATGCTTTATTGGAGTTGCCCGCA
ACAGGCAGTGTGATTCCTGCCGGAACTTCTGTCTCAGCCATCATAATTTCTGATTTAACTAGTACTTCTAGTAGTGAGATTGGCTTATCATCAGATGCAG
CTTCTTCAGCACAGAGAAATACTTGTAGAGAAACAATTGCTGGTGAGACCTTGAATGGTGAGTTCAAAGTTGCTATTTTAACAGTGAGTGACACTGTTGC
ATCAGGGGCTGGGCCTGATCGAAGTGGCCCCAGGGCAGTGTCAGTTGTAAATTCCTCATCAGAAAAATTAGGAGCAAGAGTAGTTTCAACAGCTGTTGTC
CCAGATGATGTGAGCAAAATCAAGGCTGTTGTGCAGAAATGGAGTGATACTGATAGAATGGATCTCATTCTTACCTTAGGTGGCACTGGCTTTAGCCCGA
GAGATGTGACTCCTGAAGCAACCAAGGAGTTAATTGAGAAGGAAACACCTGGCCTTCTATATGTCATGATGCAAGAGAGTTTAAAGGTGACACCTTTTGC
TATGCTATCACGATCTGCAGCAGGAATAAGAGGCTCAACATTGATCATCAATATGCCTGGGAATCCTAATGCGGTTGCAGAATGCGTGGAGGCTTTATTG
CCTGCTCTCAAGCATGCACTAAAGCAGATCAAGGGAGACAAGAGAGAGAAACATCCTCGTCACATTACTCATGCAGAAGCAGAACCTGTAGATACATGGG
AACGCAGCCATAAGCTGGCCTCTGGCAACCACACAGAGCCCGGCTGTTCATGTTCCCATTAA
AA sequence
>Potri.009G156400.7 pacid=42770750 polypeptide=Potri.009G156400.7.p locus=Potri.009G156400 ID=Potri.009G156400.7.v4.1 annot-version=v4.1
MISAEEALQTILKVAQRLLPVSVPLHDALGKVLAEDIRAPDPLPPYPASVKDGYAVIASDGPGEYPVITESRAGNDGLGVTLTPGTVAYVTTGGPIPDGA
DAVVQVEDTRKVKDPLVERVKIMVQTRKGVDIRPVGCDIEKDVVVLKCGERLGVSEIGLLATVGVMMVKVYPMPTIAVLSTGDELVEPTTGVLNRGQIRD
SNRAMLLAAAIQQQCKILDLGIARDDKEELERILDKAFSAGIHILLTSGGVSMGDRDFVKPLLENRGTVHFNKVCMKPGKPLTFAEINSKPADSIASGKI
LAFGLPGNPVSCLVCFHLFVVPAIRLVAGCANPHLLRVQACLHQPIKADPVRPEFHRAIIRWKANDGSGNPGFVAESTGHQMSSRLLSMKSANALLELPA
TGSVIPAGTSVSAIIISDLTSTSSSEIGLSSDAASSAQRNTCRETIAGETLNGEFKVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGARVVSTAVV
PDDVSKIKAVVQKWSDTDRMDLILTLGGTGFSPRDVTPEATKELIEKETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECVEALL
PALKHALKQIKGDKREKHPRHITHAEAEPVDTWERSHKLASGNHTEPGCSCSH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G20990 B73, CNX1, SIR4... SIRTINOL 4, CO-FACTOR FOR NITR... Potri.009G156400
[exp]
0 1
AT1G14850 NUP155 nucleoporin 155 (.1) Potri.008G134800
[exp]
2.64 0.8318
AT1G09620 ATP binding;leucine-tRNA ligas... Potri.004G226700
[exp]
8.66 0.8169
AT5G05460 AtENGase85A Endo-beta-N-acetyglucosaminida... Potri.010G184300
[exp]
10.58 0.7906
AT5G25150 TAF5 TBP-associated factor 5 (.1) Potri.018G020200
[exp]
12.48 0.8081
AT1G17210 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, ... Potri.011G081200
[exp]
14.49 0.7999
AT1G25472 CPuORF54 conserved peptide upstream ope... Potri.010G125700
[exp]
16.43 0.7964
AT3G11540 SPY SPINDLY, Tetratricopeptide rep... Potri.006G208900
[exp]
19.28 0.8218 Pt-SPY.2
AT4G34260 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alph... Potri.009G093500
[exp]
19.74 0.7575
AT5G22100 RNA cyclase family protein (.1... Potri.001G216400
[exp]
25.37 0.7786
AT5G57140 ATPAP28, PAP28 purple acid phosphatase 28 (.1... Potri.006G074300
[exp]
26.22 0.7691

Potri.009G156400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.