Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21530 146 / 7e-44 FHA SMAD/FHA domain-containing protein (.1) AT5G67030 41 / 0.0005 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT4G14490 40 / 0.0006 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156700 [exp] 335 / 9e-119 AT2G21530 135 / 4e-40 SMAD/FHA domain-containing protein (.1) Potri.005G138400 [exp] 42 / 0.0003 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001966 [exp] 172 / 9e-54 AT2G21530 152 / 4e-46 SMAD/FHA domain-containing protein (.1) Lus10008411 [exp] 169 / 2e-52 AT2G21530 149 / 8e-45 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.009G156900.1 pacid=42771123 polypeptide=Potri.009G156900.1.p locus=Potri.009G156900 ID=Potri.009G156900.1.v4.1 annot-version=v4.1 ATGGACATAACTACACAGTCTCTTTCCCATGCCAAGCTTCCAGGCTGCTCAACTTCTCTCGCAACACCAATCTTTCATTCCAAAGCCTCACTTCTTGCCC ATAATTCAATCACATTTCAGTCTCCTAAGAACTTTTTCACACAGCTACAAGGTGTTAGGATTAAAGCAAAGAAGCAAAGGAGTCTTGGTGCTGTACATGC TTCTGGGGCTGACAGCACTTTGACTGATGTTGAAGAAAGATGGCTTCTTGTACCCGTTGGTGATGGGGATTCAGGGCATATAGGTTTCAAGGTTAAAATG CCAGATGCATTTGAAATAGCTTCTAGTGAGGTTACTGTTGGCCGCCTCCCCGATAAGGCAGACATGGTGATTCCAGTTGCAACAGTGTCTGCTCTACATG CTCGCATTCAGAACAAGGGAGGAAATCTTGTGGTCACAGATTTGGACAGTACTAATGGAACATTCATCGATAAGAAACGGCTGCCACCTGGAGCTTCTGT CAGTGTATCGCCTGGAAGTCGTATTATATTCGGGGACACTCATCTGGCAATGTTTCTTGTCTCCAAGCTTGCCAAAGTAGAATCTGCTCCAAGCAAATCA GAAGAGTCTCAAGACGAAGTTGAGATTGATAGCCCAACTGAGAGCAATAAAACCACGGATTAA
AA sequence Show only first row Show all	>Potri.009G156900.1 pacid=42771123 polypeptide=Potri.009G156900.1.p locus=Potri.009G156900 ID=Potri.009G156900.1.v4.1 annot-version=v4.1 MDITTQSLSHAKLPGCSTSLATPIFHSKASLLAHNSITFQSPKNFFTQLQGVRIKAKKQRSLGAVHASGADSTLTDVEERWLLVPVGDGDSGHIGFKVKM PDAFEIASSEVTVGRLPDKADMVIPVATVSALHARIQNKGGNLVVTDLDSTNGTFIDKKRLPPGASVSVSPGSRIIFGDTHLAMFLVSKLAKVESAPSKS EESQDEVEIDSPTESNKTTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Potri.009G156900 [exp]	0	1
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Potri.009G156700 [exp]	1.41	0.9930
					Potri.001G230200 [exp]	4.00	0.9669
AT1G54500			Rubredoxin-like superfamily pr...		Potri.005G049000 [exp]	4.24	0.9859
AT2G30695			unknown protein		Potri.013G125500 [exp]	4.89	0.9765
AT1G16080			unknown protein		Potri.003G185501 [exp]	5.91	0.9797
AT1G16080			unknown protein		Potri.003G185754 [exp]	5.91	0.9758
AT3G12345			unknown protein		Potri.010G213600 [exp]	6.00	0.9830
AT2G38025			Cysteine proteinases superfami...		Potri.016G110400 [exp]	7.07	0.9753
AT3G09250			Nuclear transport factor 2 (NT...		Potri.016G105600 [exp]	8.06	0.9716
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.014G045600 [exp]	8.12	0.9563

Compare expression of checked genes

Potri.009G156900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.