Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16260 500 / 5e-167 Wall-associated kinase family protein (.1.2) AT1G21270 497 / 7e-166 WAK2 wall-associated kinase 2 (.1) AT1G16130 497 / 1e-165 WAKL2 wall associated kinase-like 2 (.1) AT1G79670 489 / 2e-162 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G79680 485 / 1e-160 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G69730 481 / 1e-158 Wall-associated kinase family protein (.1) AT1G19390 480 / 2e-158 Wall-associated kinase family protein (.1) AT1G16150 477 / 2e-157 WAKL4 wall associated kinase-like 4 (.1) AT1G17910 473 / 3e-156 Wall-associated kinase family protein (.1) AT1G16120 465 / 2e-153 WAKL1 wall associated kinase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G154600 [exp] 894 / 0 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 888 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G192500 [exp] 833 / 0 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2) Potri.009G154300 [exp] 724 / 0 AT1G16130 423 / 4e-142 wall associated kinase-like 2 (.1) Potri.004G191450 [exp] 708 / 0 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 682 / 0 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 674 / 0 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 666 / 0 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 658 / 0 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013383 [exp] 525 / 5e-176 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013385 [exp] 512 / 1e-171 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10034085 [exp] 505 / 2e-169 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 494 / 4e-165 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 483 / 7e-160 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013384 [exp] 471 / 2e-155 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10008105 [exp] 358 / 6e-113 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 353 / 2e-111 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10013143 [exp] 262 / 1e-81 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10014387 [exp] 258 / 7e-76 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G157201.2 pacid=42771423 polypeptide=Potri.009G157201.2.p locus=Potri.009G157201 ID=Potri.009G157201.2.v4.1 annot-version=v4.1 ATGATGAGTGTTTTCTGTCAGTCTCTCTTAGCTATATATTGTCTACCAGGAAATGAAGTTGCACAGTTAAAAATTAGCGGGAGAGAGAGTTGGTTTGGAG CTTCTTTGTATACATATATTAAGTTGGGTGGTGTATATAAAATGATACTTCAGAGGTGGGTGTTTTTGCTGATGATGTTGCTACTAGTGGCTGCTGTAAC AGGAGCAACAGCAAATCCAGATGTGAGAGATGGCTGCCAAGAAAGGTGTGGGGATGTTATTGTTCCTTACCCGTTTGGGATTGGGGAACCAAGATGTGCC CTGAATGAAAACTTCTTTCTAGACTGCAATTCCACTGATGATGGTCATCTTGAACTGTGGTTTGGAGAGAACATGCCTGCTCGCAATATATCATTGCTGA ATGGCACAGTCACTGTAGGCGTTTATACATCGTTCGATTGCTATAACAAATCAGGGCTGCAGGACAAGCTTTTCAATCCGTATGTCTCACTTGGACCAGC CTACACATTTTCAGACTCTCGAAATATGTTCACAGCAGTTGGTTGTGATACCATTGCCTTGGTGACCAACGAGGACGTGACATTCGGGGCTGCTTGTCTC TCTTTATGCACTACAAATGTTACCATGTCAAAGAAGAATCCCTGCTCAGGTTCTGGATGCTGCCAGACCTCGATTCCCAAGGGTCTCAAGTCACTGAATA TTACCATTCAGAGCATTCGCAACCACGCGGATGTTTACGAATTTAACCCTTGTGGCTTTGCATTCCTTGAGGACAAAGACTCCCTTGACCTGTCGGATTG GCCACTCTCTCGAACTCCAACAGATTTTGATACATCAAATGTTGTGATCGAATGGGTAGCTCAAAACGAGACATGCGAAAATGCTCCGGCCAATAAGAGT TCGTATGCTTGTGGCATCAATACAAATTGCTGCTACTCCGATAATGGTCAAGGATATCGTTGCGCATGCAATGAAGGGTTCGAAGGAAACCCATATCTTG AAAAAGGATGCCAAGATATTGATGAGTGCAAGTATCCTGAAACATACACATGTTATGGTAAATGCCACAACACCATTGGGGATTACGAATGTAAATGTTC TCTTGGCATGCATGGTGATGGCAAAGTAGGTTGCAGTGGGTTTGGGATCATCACAATTATTATTGCAGTTGTTGTTGGAGTGTTGTTACTGCTCATTGGT GGTTGGTGGCTGTACAAAATCATGGAGAAAAGGAAGAGCATAAAACTGAAACAGAAGTTTTTCAGACAGAATGGTGGTCTCTTGTTACAGCAACAATTAT CCTCAAGTGATCAAGGTATTTCCAAAACCAAAGTATTCAGCTCAGAGGAGTTGGAAACTGCCACAGATGGTTTCAATGTGAACAGGATACTTGGTCAAGG TGGCCAAGGTACCGTGTACAAAGGGATGCTAGCAGATGGAGTAATTGTTGCTGTCAAAAGGTCCACAATGGTGAGTGAAGAAAACCTTGAAGGATTCATC AACGAGGTCTGTATTCTTTCACAAATCAACCAAAGAAATATAGTCAGGATACTTGGTTGCTGTTTGGAGGCAGAAGTTCCTCTTTTAGTTTATGAATTTA TTCCTAATGGAACTCTTTACGAGTATCTCCATCGCCAAAATGAGGAGTTCCCTTTATCATGGGAAATGAGATTACAGATTGCTGCTGAAACTGCCGGAGC ACTTTGCTATCTTCACTCAGCAGCTTCCATTCCAATTTATCATCGAGATATAAAGTCCACCAACATACTCTTAGATAACAAGTATCGCGCAAAGATTGCC GATTTCGGGACTTCAAGATCACTCTCCGTTGATCAAACTCATTTGACGACTAATGTGCAAGGCACCTTTGGTTACTTGGACCCAGAATACTTTTGGTCCA GTCAGTATACAGATAAGAGTGATGTCTATAGTTTTGGAGTAGTTCTTGCTGAGCTCTTAACTAGACAAAAAGCAATTCTTACAAACGAGTCACAAGAACG CAAAAACTTGGCTGCACATTTTGTTCTTTTGATGGAAGAGAACAGAATTTTTGATATTGTTGATGCTCAAATTAAGGAGCACTGCCCCAAGGAGGATGTC ATCGGTGTAGCTAATATTGCAATGAGATGCTTGAATTTGAACGGAAAAATGCGACCGACAATGAAACAAGTCACATCAGAGTTGGAGAGGATCATTCAAT TGTCACAAAAGAAGGACGTTCAACAAAATAACGAAGAAGCTGATCAGGGCATCACGGCTGAAGTAATCAGTGCGTGGGATGATGCTTCTACATCAATTAC TTGCAGCAGTTTTCAAGTTGATCAAGCTCTATCATCATCTGATGTCGAACCTTTGGTCCCTTTCAAGACTTGGTGA
AA sequence Show only first row Show all	>Potri.009G157201.2 pacid=42771423 polypeptide=Potri.009G157201.2.p locus=Potri.009G157201 ID=Potri.009G157201.2.v4.1 annot-version=v4.1 MMSVFCQSLLAIYCLPGNEVAQLKISGRESWFGASLYTYIKLGGVYKMILQRWVFLLMMLLLVAAVTGATANPDVRDGCQERCGDVIVPYPFGIGEPRCA LNENFFLDCNSTDDGHLELWFGENMPARNISLLNGTVTVGVYTSFDCYNKSGLQDKLFNPYVSLGPAYTFSDSRNMFTAVGCDTIALVTNEDVTFGAACL SLCTTNVTMSKKNPCSGSGCCQTSIPKGLKSLNITIQSIRNHADVYEFNPCGFAFLEDKDSLDLSDWPLSRTPTDFDTSNVVIEWVAQNETCENAPANKS SYACGINTNCCYSDNGQGYRCACNEGFEGNPYLEKGCQDIDECKYPETYTCYGKCHNTIGDYECKCSLGMHGDGKVGCSGFGIITIIIAVVVGVLLLLIG GWWLYKIMEKRKSIKLKQKFFRQNGGLLLQQQLSSSDQGISKTKVFSSEELETATDGFNVNRILGQGGQGTVYKGMLADGVIVAVKRSTMVSEENLEGFI NEVCILSQINQRNIVRILGCCLEAEVPLLVYEFIPNGTLYEYLHRQNEEFPLSWEMRLQIAAETAGALCYLHSAASIPIYHRDIKSTNILLDNKYRAKIA DFGTSRSLSVDQTHLTTNVQGTFGYLDPEYFWSSQYTDKSDVYSFGVVLAELLTRQKAILTNESQERKNLAAHFVLLMEENRIFDIVDAQIKEHCPKEDV IGVANIAMRCLNLNGKMRPTMKQVTSELERIIQLSQKKDVQQNNEEADQGITAEVISAWDDASTSITCSSFQVDQALSSSDVEPLVPFKTW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	0	1
AT5G05800			unknown protein		Potri.001G238000 [exp]	1.00	0.9837
AT1G47580			Pentatricopeptide repeat (PPR)...		Potri.002G130900 [exp]	3.31	0.9155
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Potri.001G254308 [exp]	4.47	0.9331
					Potri.017G065250 [exp]	5.00	0.8863
AT1G05790			lipase class 3 family protein ...		Potri.002G231534 [exp]	6.00	0.9149
AT1G03687			DTW domain-containing protein ...		Potri.013G132100 [exp]	7.87	0.8507
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085450 [exp]	9.64	0.8779
AT3G11310			unknown protein		Potri.001G182200 [exp]	10.00	0.9171
AT5G05800			unknown protein		Potri.011G094000 [exp]	10.67	0.8562
AT1G05790			lipase class 3 family protein ...		Potri.002G231567 [exp]	11.83	0.8841

Compare expression of checked genes

Potri.009G157201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.