Plant FIBer expression Database

Potri.009G157700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74470 518 / 0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G195800
[exp]
792 / 0 AT1G74470 521 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Potri.012G068801
[exp]
516 / 0 AT1G74470 774 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008405
[exp]
644 / 0 AT1G74470 536 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Lus10021665
[exp]
521 / 0 AT1G74470 784 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Lus10001642
[exp]
516 / 0 AT1G74470 782 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Lus10026772
[exp]
157 / 3e-46 AT1G74470 126 / 2e-35 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.009G157700.2 pacid=42772682 polypeptide=Potri.009G157700.2.p locus=Potri.009G157700 ID=Potri.009G157700.2.v4.1 annot-version=v4.1
ATGGCCGCACTAGCACTAACCCACAACCTTCATTTCACTCCAACCCTACCTCTCAAAGCCATAAAACAACACCAGCAACCAAAACCCAAAACTCTAACAA
TCACCGCCACCTCATCCAGCCCCCTCTCTGGCCGCAAACTCCGCGCCGCTGTGATCGGCGGCGGCCCAGCAGGTTCATCCGCCGCAGAAGCCTTAGCCGC
CGGAGGAGTTGAAACCTTCCTCTTCGAGCGTAGCCCTTCCACAGCTAAGCCATGTGGTGGAGCCATCCCTCTTTGCATGATCGACGAGTTTTCCATCCCT
CTTCACCTCATCGACCGACATGTCACTCGCATGAAGATCATCTCTCCTTCGAACCTGACCGTTGATTTCGGATCGAAAACATTAAAGTCTCATGAGTTTA
TCCCCATGTTGCGCCGCGAAGTACTGGATTCTTTTCTCCGGTCTCGTGCTCAATCCAACGGTGCTCAATTTATCACTGGCCTTGTCACGGATATTGAGGT
GCCTGATTTTTTATCTTCAAAACCGTATGTTATCCACCACACTATTAATAATTGTAAACGATCATTAGCCGTTGATTTGATTGTCGGGGCTGATGGGGCT
AATAGCAGGGTAGCGAAGATTATTAATGCAGGGAATTACAGATGTGCCATTGCTTTTCAAGAGAGGATCAAATTACCGGATGAGAAAATGGAGTATTATC
ATAATCTCGCAGAAATGTATGTTGGGAATGACGTGTCGCCTGACTTTTACGCGTGGGTGTTTCCAAAATGCGACCACGTGGCGGTGGGGACGGGCACGGC
GTGTGCGAGGCGGGATATTAAGGTGTATCAAAGAGGGATCAGGGAGAGGGTTAAGGAGAAGATTAAGGGTGGCAGAGTGATTAAAGTGGAGGCTCACCCA
ATCCCGGAGCAACCGCGTCCGAGGCGTGTGCGTGGACGTGTGGCGCTTGTTGGGGACGCGGCGGGGTATGTGACCAAGTGTTCGGGAGAAGGAATATATT
TCGCGGCGAAATCCGGTAGAATGTGCGGGGAGGCTATTGTGAAGGCTTCAGAAGGGGGGGAGAGGATGGTCAGTGAGGAGGATTTGAGGAGGGAGTACTT
GAGAGAATGGGATAACAAGTATGTGAATACTTTCAGGTTCTTGGATTTGTTGCAAAGAGTGTTTTATGGGAGTAATGTGGGTAGAGAGGCATTGGTGGAG
TTATGTGGGGATGAGTATGTGCAGAGGATGACATTTGATAGTTACTTGTACAAGAAGATGGCTAGTGGAGATAGATGGGATGATGTGAAATTGGTTTTGA
ATACTTTTGGGAGTTTTATGAGGTGTAAGGTTGTAGGAAGAGAGATGGAGGCTTTGAAGCTGTCACTTTTCTCTTTTTCCATGGCGAGGAAGAAGGTAGA
GTGGATGTAG
AA sequence
>Potri.009G157700.2 pacid=42772682 polypeptide=Potri.009G157700.2.p locus=Potri.009G157700 ID=Potri.009G157700.2.v4.1 annot-version=v4.1
MAALALTHNLHFTPTLPLKAIKQHQQPKPKTLTITATSSSPLSGRKLRAAVIGGGPAGSSAAEALAAGGVETFLFERSPSTAKPCGGAIPLCMIDEFSIP
LHLIDRHVTRMKIISPSNLTVDFGSKTLKSHEFIPMLRREVLDSFLRSRAQSNGAQFITGLVTDIEVPDFLSSKPYVIHHTINNCKRSLAVDLIVGADGA
NSRVAKIINAGNYRCAIAFQERIKLPDEKMEYYHNLAEMYVGNDVSPDFYAWVFPKCDHVAVGTGTACARRDIKVYQRGIRERVKEKIKGGRVIKVEAHP
IPEQPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCGEAIVKASEGGERMVSEEDLRREYLREWDNKYVNTFRFLDLLQRVFYGSNVGREALVE
LCGDEYVQRMTFDSYLYKKMASGDRWDDVKLVLNTFGSFMRCKVVGREMEALKLSLFSFSMARKKVEWM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74470 Pyridine nucleotide-disulphide... Potri.009G157700
[exp]
0 1
AT1G32170 XTH30, XTR4 xyloglucan endotransglycosylas... Potri.001G136100
[exp]
1.41 0.8173 XTR4.2
AT1G59900 AT-E1 ALPHA, AT... pyruvate dehydrogenase complex... Potri.008G192500
[exp]
7.74 0.7760 ALPHA.9
AT1G15530 Concanavalin A-like lectin pro... Potri.015G083300
[exp]
12.68 0.7888
AT5G60760 P-loop containing nucleoside t... Potri.009G009200
[exp]
14.86 0.7799
AT2G48010 RKF3 receptor-like kinase in in flo... Potri.005G040200
[exp]
18.89 0.7736
Potri.016G091300
[exp]
20.27 0.7995
AT1G34670 MYB ATMYB93 myb domain protein 93 (.1) Potri.007G093900
[exp]
20.83 0.7599
AT5G20885 RING/U-box superfamily protein... Potri.018G046900
[exp]
21.81 0.7770
AT1G23160 Auxin-responsive GH3 family pr... Potri.014G136800
[exp]
29.59 0.7312
AT2G05940 RIPK RPM1-induced protein kinase, P... Potri.006G219300
[exp]
33.10 0.7067

Potri.009G157700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.