Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10950 233 / 5e-73 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71250 168 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 157 / 5e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G37690 144 / 1e-39 SGNH hydrolase-type esterase superfamily protein (.1) AT1G29670 140 / 8e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 140 / 1e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 138 / 4e-37 GLIP7 GDSL-motif lipase 7 (.1) AT1G33811 132 / 1e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 132 / 1e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 130 / 2e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141300 [exp] 250 / 2e-79 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G062342 [exp] 176 / 6e-53 AT4G10950 337 / 7e-116 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G076600 [exp] 149 / 2e-41 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 147 / 1e-40 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G102500 [exp] 146 / 3e-40 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G064500 [exp] 140 / 4e-38 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 139 / 2e-37 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G089700 [exp] 139 / 2e-37 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 137 / 1e-36 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026771 [exp] 298 / 2e-98 AT4G10950 199 / 8e-60 SGNH hydrolase-type esterase superfamily protein (.1) Lus10008403 [exp] 294 / 7e-98 AT4G10950 141 / 1e-38 SGNH hydrolase-type esterase superfamily protein (.1) Lus10001532 [exp] 229 / 4e-71 AT4G10950 544 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10032399 [exp] 210 / 6e-64 AT4G10950 495 / 1e-175 SGNH hydrolase-type esterase superfamily protein (.1) Lus10016929 [exp] 164 / 1e-46 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10001540 [exp] 148 / 9e-42 AT1G71691 393 / 2e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011997 [exp] 141 / 4e-38 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 140 / 9e-38 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 137 / 1e-36 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10041847 [exp] 137 / 1e-36 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.009G157800.1 pacid=42770884 polypeptide=Potri.009G157800.1.p locus=Potri.009G157800 ID=Potri.009G157800.1.v4.1 annot-version=v4.1 ATGGCTAAAAGGCTGCAGACCAGAACAACATCATCAAGAAGAAGAGCAGCAATGGTGTTTCTATATCTTCTTCTTGCTATCTTAATGAGCTCGATCGGTC TAGTGCATGGACAATTCTTGCCAAATACACCCTCTGTAATGGAAAATGGATCACATGTATCTGCATTGTACTTAATGGGTGATTCTTCTGTTGACTGTGG AAAGAACAGTCTCTTTTACCCTCTCCTTCGCAGAAATCTTTCTTTGCTTCCTTGTAATGGGTCGGACTCCACCCTTCTTCCTCATCTTCTAGCTCAGAAG ATGGGCTTGCCTAATTCCCAGCCATTCAACAGTCAGAATGGATCGATTGAAGGGCTAATAAAAGGTGTGAATTATGGTTCAGCGCATGCAACAATCATAA GCCCCAGCAGCCAGAGCCACTCCTCTTTTAACCAACAGCTGCGCCAAGTATACGAGACCTTCCAGTTGTTGCAGCTTCAGCTTGGACAGGACATAGCCCA AGATTTTATCAAATCCTCCATGTTCTATCTTTCCTTTGGAAAAGATGACTATGTTGACCTCTTTCTGAGGAATTCTTCAGGCGTGATGCTCAAGTACAGT GGCCAAGAATTTGCTCGCATTCTGGTCAACCAGATGGTTCATGCTATACGGACCCTTTACGATGCAAATGTGAGGAAGATCATAAGCACAGGAATATTGC CGCTGGGATGCACTCCACGCGTGGTATGGGAGTGGTATAATTCAACTGCTATTCATCATGGAATGGGTTGTGTAGAAGAGATCAACGAGTTGGTTTTGCA ATACAATACAATGCTTAATGAGCATATTGTGGAGCTCAATGTGGAATTACCTGACGCTAAGATAATTTTCTGTGATGTATACCAGGGAATGATGGAGGTC ATAACCAACCCAACACTCTTCGGATTTAGGGATACAAAGAATGCGTGCTGTGGGCTCGGTCATCATGGTGCAGAGATTGGCTGTGTTTCTGCAGAGACGG CCTGCAACCAATCTTCAGCTCATGTCTGGTGGGATCTTTACAATCCTACACAAGCATTGAACTCCTTGCTTGCTGATTCAGCCTGGTCTGGCCATCCCTT GCCCGGCATTTGTCGTCCTATCACAGTCCAGGAATTGGTGTCCACTTCACATTTGATCACCGGAGTGCCATCCAAGTGA
AA sequence Show only first row Show all	>Potri.009G157800.1 pacid=42770884 polypeptide=Potri.009G157800.1.p locus=Potri.009G157800 ID=Potri.009G157800.1.v4.1 annot-version=v4.1 MAKRLQTRTTSSRRRAAMVFLYLLLAILMSSIGLVHGQFLPNTPSVMENGSHVSALYLMGDSSVDCGKNSLFYPLLRRNLSLLPCNGSDSTLLPHLLAQK MGLPNSQPFNSQNGSIEGLIKGVNYGSAHATIISPSSQSHSSFNQQLRQVYETFQLLQLQLGQDIAQDFIKSSMFYLSFGKDDYVDLFLRNSSGVMLKYS GQEFARILVNQMVHAIRTLYDANVRKIISTGILPLGCTPRVVWEWYNSTAIHHGMGCVEEINELVLQYNTMLNEHIVELNVELPDAKIIFCDVYQGMMEV ITNPTLFGFRDTKNACCGLGHHGAEIGCVSAETACNQSSAHVWWDLYNPTQALNSLLADSAWSGHPLPGICRPITVQELVSTSHLITGVPSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10950			SGNH hydrolase-type esterase s...		Potri.009G157800 [exp]	0	1
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Potri.008G099900 [exp]	2.44	0.8415
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.008G053100 [exp]	15.62	0.8550	UXS1.2
AT3G03280			unknown protein		Potri.004G094000 [exp]	24.00	0.8404
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G029300 [exp]	30.59	0.8386	Pt-SNF4.2
AT5G64090			unknown protein		Potri.003G020500 [exp]	33.94	0.8225
					Potri.011G130901 [exp]	37.22	0.7933
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.010G109200 [exp]	44.89	0.8107	Pt-CEL1.2
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124200 [exp]	54.77	0.7823
AT3G45850			P-loop containing nucleoside t...		Potri.014G170950 [exp]	64.31	0.7737
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G078400 [exp]	78.77	0.7707	UF3.3

Compare expression of checked genes

Potri.009G157800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.