Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21040 670 / 0 FBX2 F-box protein 2 (.1.2) AT5G49200 64 / 1e-10 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 58 / 7e-09 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT4G25440 58 / 8e-09 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 57 / 2e-08 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G21650 57 / 3e-08 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT1G27470 57 / 4e-08 transducin family protein / WD-40 repeat family protein (.1) AT3G51930 56 / 4e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 56 / 6e-08 WD-40 repeat family protein / notchless protein, putative (.1) AT2G47410 56 / 9e-08 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077800 [exp] 66 / 2e-11 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G051100 [exp] 58 / 1e-08 AT2G26490 223 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 56 / 3e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G134800 [exp] 56 / 4e-08 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.010G012800 [exp] 56 / 6e-08 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.015G137200 [exp] 56 / 6e-08 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.005G148500 [exp] 54 / 1e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 54 / 2e-07 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 53 / 2e-07 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008402 [exp] 726 / 0 AT5G21040 658 / 0.0 F-box protein 2 (.1.2) Lus10026770 [exp] 706 / 0 AT5G21040 647 / 0.0 F-box protein 2 (.1.2) Lus10001301 [exp] 57 / 2e-08 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10038296 [exp] 57 / 2e-08 AT4G34380 207 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 57 / 3e-08 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10024128 [exp] 57 / 3e-08 AT4G07410 996 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Lus10033255 [exp] 56 / 5e-08 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 55 / 6e-08 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037500 [exp] 55 / 1e-07 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10038890 [exp] 55 / 1e-07 AT5G51980 551 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.009G157900.2 pacid=42771432 polypeptide=Potri.009G157900.2.p locus=Potri.009G157900 ID=Potri.009G157900.2.v4.1 annot-version=v4.1 ATGGCATTTGAATGCCAAAAGAGCACTGAGGTGTCGAAAAGTCTTGCCATTTGTGTTGAAAAAAGTAATTCCAATACGGAACATCTTGAAATTTCGAAGT CTCCTTTAGACTGTTACCCTAAGAAGGGGATTTTAAGCAGTTTGAGTTCAAAACAGCTTTCTTGTAATGATGTTTTGCTCAATTGTCGCCGGTCAATTAC CGACCTTCCTCCGGCATTGATTTCTGAGATTCTTAGTTGCCTTGATCCTCAAGAGCTTGGTATAGTTTCATGTGTATCGAGAGTACTTAATAGTCTTGCA ACCGAGAATAGTGTTTGGAAGGAAGTATATGGTGAGAGATGGGGACTCCCTATAGTTCCTGCACCATTGGGTGCAGGGGTTTCAAATGAGAAGTCATGGA AGGAACTGTTTGTGGAGAGGGAGTACAGGAGTAAGATTTTTTTGAGTCGTTATAGCATTGATACTTTGCATGGGCATACTGAAGCAGTTAGAACAGTTTC TCTATTGGCTTCTGCCAAGCTCATTTTTACCTCTGGGTATGATATGATTGTGCGAATGTGGGACATGGAAGACGGGTTGTATATTGCATCATCACGGCCT CTTGGTTGCACTATACGAGCAGTTGCAGCGGACACGAAGCTGTTGGTTGCTGGTGGTACTGATGGTTTTATTCAAGGCTGGAGGGCAGTTGAGGGTCTCA AGCACTTGTTTGACCTTAAAGGTTCTGAGGTGCCAAACACTGAATTTAGAATTTGGGAGCATGAGGGACCTATAACCTCTCTTGCCTTGGACCCCACAAG GATTTATAGTGGGTCATGGGACATGACTGTTCGTATATGGGATCGTTCCTCACTTGAATGCATAAAGATCTTGAGGCATGGTGACTGGGTGTGGAGCCTT GTTCCGCATGATACTACAGTTGCTAGCACATCAGGTTCAGACGTGTATGTTTGGGACACTAATAGTGGGACTCTGCTAACTGTTATTCATAGTGCTCATG TAGGTAACACTTATTCTTTGGCTCGAAGCCATACAGAGGATTTCATTTTTACAGGAGGAGAAGATGGGGCTATGCACATGTTTGAGATCACTGGTCCTAA ACCTGAGGCTAATGTTTTTAAGGTTGCAACTTGGATGCCTCACTCAGGGCCTGTTTATTCCCTTGCATTTGAGTTTCCATGGCTTGTTTCAGCTTCTAGT GATGGGAGGCTGTCACTAGTTGATGTGAGAAAACTACTAAGGACCAACAGACGTTCTCTACGAAAGAATGTTTCAAGGGTTACCGATAAGGACCGTAACA ATGTTGAACCACCTCAGAGGATGTTACATGGGTTTGGGCCCAATTTGTTTTCAGTAGATGTTGGTGCTGACCGTATTGTATGTGGAGGAGAGGAAGGTGT TGTTAGGATCTGGAACTTCTCAAAGGCGCTGGAAAGGGAGCGGACAGCTCGTGCCATGAGAGGAATACGGTTGGAGAACAGGATGAGGCGTCGTAGACTT CAAATAGAGATGAGCAGTAAGGGTGGTAGGACTGATCAATGCTCTGTTGCAGCCAAGAAGAACCCAATGCATGTAGACAAGAGTGGTGTCTGGCGCAATA AACATGGGATGAGTGGCAAGCTGAAAGCATAG
AA sequence Show only first row Show all	>Potri.009G157900.2 pacid=42771432 polypeptide=Potri.009G157900.2.p locus=Potri.009G157900 ID=Potri.009G157900.2.v4.1 annot-version=v4.1 MAFECQKSTEVSKSLAICVEKSNSNTEHLEISKSPLDCYPKKGILSSLSSKQLSCNDVLLNCRRSITDLPPALISEILSCLDPQELGIVSCVSRVLNSLA TENSVWKEVYGERWGLPIVPAPLGAGVSNEKSWKELFVEREYRSKIFLSRYSIDTLHGHTEAVRTVSLLASAKLIFTSGYDMIVRMWDMEDGLYIASSRP LGCTIRAVAADTKLLVAGGTDGFIQGWRAVEGLKHLFDLKGSEVPNTEFRIWEHEGPITSLALDPTRIYSGSWDMTVRIWDRSSLECIKILRHGDWVWSL VPHDTTVASTSGSDVYVWDTNSGTLLTVIHSAHVGNTYSLARSHTEDFIFTGGEDGAMHMFEITGPKPEANVFKVATWMPHSGPVYSLAFEFPWLVSASS DGRLSLVDVRKLLRTNRRSLRKNVSRVTDKDRNNVEPPQRMLHGFGPNLFSVDVGADRIVCGGEEGVVRIWNFSKALERERTARAMRGIRLENRMRRRRL QIEMSSKGGRTDQCSVAAKKNPMHVDKSGVWRNKHGMSGKLKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21040		FBX2	F-box protein 2 (.1.2)		Potri.009G157900 [exp]	0	1
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	14.76	0.8317
AT4G38810			Calcium-binding EF-hand family...		Potri.004G166900 [exp]	27.44	0.8153
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Potri.014G016800 [exp]	32.31	0.7661
AT1G51920			unknown protein		Potri.001G172850 [exp]	34.11	0.8022
AT1G78230			Outer arm dynein light chain 1...		Potri.002G097800 [exp]	35.44	0.7987
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.008G069200 [exp]	46.64	0.7638
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.003G080400 [exp]	48.98	0.7026
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.008G003300 [exp]	54.55	0.7836	GCN4.3
AT5G19430			RING/U-box superfamily protein...		Potri.009G070600 [exp]	56.44	0.7236
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.001G439600 [exp]	59.39	0.7808

Compare expression of checked genes

Potri.009G157900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.