Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27110 1139 / 0 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G38180 574 / 0 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G38170 436 / 4e-143 FRS9 FAR1-related sequence 9 (.1) AT4G15090 409 / 3e-129 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT5G18960 359 / 7e-111 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G22170 356 / 4e-109 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT3G06250 327 / 3e-99 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT1G76320 325 / 1e-98 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G19990 301 / 2e-89 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G32250 288 / 2e-84 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G196300 [exp] 1658 / 0 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.008G011800 [exp] 1038 / 0 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.011G145800 [exp] 658 / 0 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 615 / 0 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209000 [exp] 608 / 0 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 591 / 0 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209100 [exp] 520 / 1e-175 AT4G38170 716 / 0.0 FAR1-related sequence 9 (.1) Potri.003G110300 [exp] 416 / 3e-131 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020600 [exp] 403 / 7e-127 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 309 / 1e-94 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10026767 [exp] 155 / 1e-43 AT2G27110 144 / 1e-40 FAR1-related sequence 3 (.1.2.3) Lus10026732 [exp] 61 / 6e-11 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10026854 [exp] 58 / 1e-08 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 54 / 2e-07 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.009G158400.1 pacid=42771452 polypeptide=Potri.009G158400.1.p locus=Potri.009G158400 ID=Potri.009G158400.1.v4.1 annot-version=v4.1 ATGGATGTTCATGTGATTGACGATGAAGAGGGGACAAGTCATCGTGGGGTGGCCTACAATGGAGATGCAGAACCAAATGACAGTGGAGAAGCAAATAATG GCGAGCATGATGAGGATGGAGCTGCGGAGTTGCATGAGCCATGTGTCGGCATGGAATTTGATTCGGAGAATGCTGCTAAGACTTTCTACGATGAGTATGC TAGACGTCTAGGTTTTAGCACCAAAGTTGCTCACTTTACCCGTCCTAAAACTGATGGGGCCATAGCTGCTAGGGAGTTTGTATGTGGCAGGGAGGGTTTG AAGAGAAGGTCTGCGGATAGTTGTCATGCAATGCTTAGAATAGAATTAAAGAGAGGTAAATGGGTCGTGACACACTTTGTAAAGGAGCATAACCATTCAA CTGTTAATCCCAATAAAGTGCACTACCTTCGGCCCCGCAGGCATTTTGCTGGTGCTGCAAAGAGTGCTGCCAAAACTGGGCAAGGAGTGGGAGTTTCTCC AAGTGGTGATGGCCAAGCAGCAGTTGTTGCTGCTAGTGGTTTTAGCCAAGGAGGGGGAGTTGTTCCAAGTGGTGTAATGTATCTTTCCATGGATGGACAC CGCACACCTGTCTCGGAGACAAATCATGGAGTTAGGAACACTACCCCTGCTGAACCAAACCGTGTCGTTAAGACTTCTACAGCAGTGAATTATATTGCTC GGTCCAGTAACCAAAAGAGAACACTAGGTAGGGATGCTCAGAATCTGTTGGAGTATTTCAAGAAAATGCAAGCTGAGAATCCTGGTTTCTTTTATGCAAT ACAACTCGATGATGAAAATCGAATGGCAAATGTTTTTTGGGCTGATGCAAAGTCAAGAACAGCTTACACTCATTTCGGTGATGCAGTTACATTTGAAACA AGTCCTCGAGTTAATCAATATAGGGTGCCATTTGCCCCATTTACAGGTTTGAACCATCACGGTCAAACAATTTTATTTGGCTGTGCAATACTTCTTGATG ATTCTGAAGCTTCTTTTGTTTGGTTGTTCAAGACATTTCTGACAGCAATGTATGATCAACAGCCTGCTTCACTAATCACCAACCAAGACAAGGCCATACA GACGGCAGTTTCTCAGGTGTTTCCTGATACCCGACACTGTATCAGTAAATGGCATGTTTTAAGAGAAGGTCAGGAAAAACTGGCTCATGTATGTAATGCA CATCCCAATTTTCAATTGGAACTGTATAACTGTATCAACTTGACTGAAACTATCGAGGAGTTTGAAAACTCATGGATTGATATTCTTGACAAATATGATT TGAGAGGACATGACTGGCTTCAATCATTGCATGATGCTCGTGCTCAATGGGTTCCAGTGTACTTTCGGGATTCTTTTTTTGCTGTAATGTGTCCAAATCA AGGATTTGATGGTACTTTTTTTGATGGTTATGTGAACCAACAGACCACATTGCCAATGTTCTTTAGACAGTATGAAAGAGCATTAGATAATTGGTTCGAA AGAGAGTTAGAAGCAGATTTTGATACAATTTGCACCACACCAGTTTTGAGGACGCCATCTCCTATGGAAAAACAGGCGGCAAATCTTTATACAAGGAAGA TATTTGCAAAATTTCAAGAAGAGTTGGTTGAAACTTTTGTATATACTGCTAATAGGATTGAGGGCGATGCAGCTATCAGCACATTCAGGGTTGCAAAATT TGAGGATGACCAAAGGGCTTATATGGTTTCATTAAACTATCCAGAAATGAGAGCAAACTGCAGCTGCCAAATGTTTGAGTATTCAGGCATTCTTTGTAGA CATGTTTTGACAGTATTCACAGTGACAAATGTTCTTACATTACCACCCCATTACATCTTAAAACGATGGACGAGAAATGCCAAAACTGGTGCAGGAACAG ATGACCGTGGTGTTGATTTGCCTGGCCAAGAGTCTCTTACTTTGCGGTATAACAATCTATGTCGGGAAGCCATAAAATATGCAGAGGAAGGGGCAATAGC TGTGGAAACTTATAATGCTGCTATGGGTGCTCTTAGAGAAGGTGGGAAAAAGGTTGCTGCTGTGAAGAAAAATGTTGCCAAAGTCTCACCTCCTGGCTGT CAGGGTGGTGGGACTGGTAACGATGATTGGAAGACCTCAACTTCAGCATCGGATACAACCCCATTTTTATGGCCATTGCAAGATGAAGTTACCCGGCGAT TTAATCTGAATGATACTGGCAATCCAGTGCAATCTGTTGCTGATTTGAATCTTCCCCGCATGGCCCCCGTGTCGCTTCAGCGTGATGATGGACCTCCTGG TAACATGGCAGTTCTTCCTTGTCTCAAATCAATGACTTGGGTGATGGAGAACAAGAGCTCAACACCAGGGAATAGAGTTGCTGTCATCAACCTGAAGTTG CAAGATTATGGCAAGACTCCATCAACAGAATTGGAGGTTAAGTTTCAACTCTCGAGAGTTACATTGGAGCCGATGTTGAGGTCTATGGCATACATCAGTG AACAGCTCTCAACACCAGCTAACAGAGTTGCTGTCATCAATCTGAAGCTTCAAGACACTGAAACAACTACGGGAGAGTCAGAGGTTAAATTTCAGGTTTC CAGAGATACATTAGGTGCCATGTTGAGATCGATGGCCTACATTCGCGAGCAGCTTTCAATTTCTGTTGAGCCCCAAGCAGAGCCTCCGTCAAAGAAGCAT CGGAAGTGA
AA sequence Show only first row Show all	>Potri.009G158400.1 pacid=42771452 polypeptide=Potri.009G158400.1.p locus=Potri.009G158400 ID=Potri.009G158400.1.v4.1 annot-version=v4.1 MDVHVIDDEEGTSHRGVAYNGDAEPNDSGEANNGEHDEDGAAELHEPCVGMEFDSENAAKTFYDEYARRLGFSTKVAHFTRPKTDGAIAAREFVCGREGL KRRSADSCHAMLRIELKRGKWVVTHFVKEHNHSTVNPNKVHYLRPRRHFAGAAKSAAKTGQGVGVSPSGDGQAAVVAASGFSQGGGVVPSGVMYLSMDGH RTPVSETNHGVRNTTPAEPNRVVKTSTAVNYIARSSNQKRTLGRDAQNLLEYFKKMQAENPGFFYAIQLDDENRMANVFWADAKSRTAYTHFGDAVTFET SPRVNQYRVPFAPFTGLNHHGQTILFGCAILLDDSEASFVWLFKTFLTAMYDQQPASLITNQDKAIQTAVSQVFPDTRHCISKWHVLREGQEKLAHVCNA HPNFQLELYNCINLTETIEEFENSWIDILDKYDLRGHDWLQSLHDARAQWVPVYFRDSFFAVMCPNQGFDGTFFDGYVNQQTTLPMFFRQYERALDNWFE RELEADFDTICTTPVLRTPSPMEKQAANLYTRKIFAKFQEELVETFVYTANRIEGDAAISTFRVAKFEDDQRAYMVSLNYPEMRANCSCQMFEYSGILCR HVLTVFTVTNVLTLPPHYILKRWTRNAKTGAGTDDRGVDLPGQESLTLRYNNLCREAIKYAEEGAIAVETYNAAMGALREGGKKVAAVKKNVAKVSPPGC QGGGTGNDDWKTSTSASDTTPFLWPLQDEVTRRFNLNDTGNPVQSVADLNLPRMAPVSLQRDDGPPGNMAVLPCLKSMTWVMENKSSTPGNRVAVINLKL QDYGKTPSTELEVKFQLSRVTLEPMLRSMAYISEQLSTPANRVAVINLKLQDTETTTGESEVKFQVSRDTLGAMLRSMAYIREQLSISVEPQAEPPSKKH RK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.009G158400 [exp]	0	1
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	1.41	0.9257
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.004G196300 [exp]	2.44	0.9063
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.017G111500 [exp]	3.60	0.8793
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Potri.013G002400 [exp]	4.69	0.8817
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	6.24	0.9056	CPC902,TTN8.3
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.008G149900 [exp]	7.48	0.8956
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.005G071900 [exp]	7.48	0.8773
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	8.12	0.8941
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	8.48	0.8856	GTE910
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	8.77	0.8939	Pt-FHY3.2

Compare expression of checked genes

Potri.009G158400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.