Plant FIBer expression Database

Potri.009G158600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27100 742 / 0 C2H2ZnF SE C2H2 zinc-finger protein SERRATE (SE) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G196400
[exp]
992 / 0 AT2G27100 761 / 0.0 C2H2 zinc-finger protein SERRATE (SE) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026766
[exp]
815 / 0 AT2G27100 835 / 0.0 C2H2 zinc-finger protein SERRATE (SE) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF04959 ARS2 Arsenite-resistance protein 2
CL0361 PF12066 SERRATE_Ars2_N SERRATE/Ars2, N-terminal domain
Representative CDS sequence
>Potri.009G158600.1 pacid=42770853 polypeptide=Potri.009G158600.1.p locus=Potri.009G158600 ID=Potri.009G158600.1.v4.1 annot-version=v4.1
ATGGCCGAAGTCATTAACATGCCGGTCGATTCCCTCGACCATCGCGGCGGGAACGGCGGCGGAGGAGGACGGGACAGGAAGGATAAGCCACCCACTGACG
ATCCACAATCTTCGCCTCCACCACCTCCTCCTACTCAACGACGCCGTGAGAGAGACTCAAGAGAGAGACGTGAAGATTTCGATAGACCTCCTAATCGACG
TGGAGGCGATTATTATGATAGGAATCGGTCCCCGCCCCCTCCGCAACGAGAGAGGGAGAGAGAGTATAAGAGGAGGAGTAGTGTGAGTCCTCCACCTCCG
GTGCCTTACAGAGACAGGAGACACTCGCCGCCGCAGAGGAGGTCGCCTCCGTATAAACGATCGAGGAGGGAGGATGGTGGTTATGATGCCAGGAGAGGAA
GTCCTAGAGGTGGATTTGGAGGTGGTGATCGAAGGTTTGGATATGATTATGGTGGTGGATATGACCGTGAGATGGGAGGTAGGCCAGGTTATGGTGAAGA
AAGGCCTCATGGCCGATACATGGGTCGTGGAGGCGGATATCAAGGTGGTCCTCCAGATTGGGAATTGGGACGTGGTGGTTATGGCAATACTTCCAATGTA
GTGCCTGCTCAAAGAGAAGGCTTAATGTCATACAAGCAATTCATTCAGGAGCTTGAAGATGATATATTGCCATCTGAAGCTGAGCGCAGATATCAAGAAT
ACAAGTCAGAGTATATTTCGACTCAGAAACGGGTTTTCTTTGAGGCCCATAAAGATGAAGAATGGTTGAAGGACAAGTATCATCCAACGAATTTGGTTGC
AGTCATTGAAAGGAGGAATGAACTTGCACGGAAGGTTGCGAAAGACTTTTTGCTTGATTTGCAGAGTGGAACATTGGACTTAGGTCCTGGTGTCAACGCG
ATATCATCAAATAAATCAGGGCAGGCAAGTGATCCAAATTCTGATGATGATGCAGAGACTGGCGGTAAACGAAGAAGGCATGGTCGGCCACCTGCAAAAG
ACACTGATCTTTCAGCTGCTCCAAAGGCTCATCCAGTGAGTTCAGAACCCAAGAGAATCCAAGTTGACGTTGAACAAGCACAGACCCTTGTACGGAAACT
TGATTCTGAAAAAGGTGTCGAAGAAAATATTTTAAGCGGGTCTGAGAATGACAAAATGAGTAGAGAGAAATCCCATGGAAGCTCTACTGGCCCTGTTATC
ATCATACGAGGCTTAACCTCAGTCAAGGGCCTCGAAGGTGTGGAGCTACTGGATACACTTATAACATATCTCTGGCGAGTCCATGGATTGGATTACTATG
GAATGATTGAAACTAATGAAGCTAAGGGTCTTAGGCATGTGAGAGCTGAGGGAAAGAGTTCTGATACAAGCAACAGTGGAACTGAGTGGGAAAAGAAACT
TGACTCACACTGGCAAGAGAGATTGAGGGGTCAAGATCCTCTAGAAAAAATGACTGCTAAGGAGAAGATAGATGCTACTGCAGTTGAAGGTTTGGATCCA
TATGTCCGGAAGATTAGAGATGAAAAGTATGGGTGGAAGTATGGTTGTGGAGCCAAGGGTTGCACAAAGCTCTTCCATGCTGCTGAGTTTGTGCACAAGC
ATCTCAAGCTGAAACACCTTGAACTTGTTATGGAGCTGACTGCCAAAGTGCGGGAAGAGCTGTATTATCAAAACTATATGAATGATTCAGATGCACCTGG
TGGCACACCTGTCATGCAGCAGTCCATGCCGAAGGATAAGCCACAAAGACGCAGGCTTGGTCCGTTGAAGGATGAACGCGGCAACCGTAGAGAACGTGAC
AATAGAGCAAATGGCAATGAAAGATTTGATAGGTCTGAAAACCCACAATCAGGTGACTTCCAATCTAATGATGGTCCTGATGGAGGAAATCGTGATGAAG
CAATGTTTGATACTTTTGGAGGACAAGGCATCCATGTACCTTCCCCTTTCCCCTCAGATATAGCTCCTCCACCAGTTTTGATGCCTGTTCCTGGAGCTGG
TCCACTGGGGCCTTTTGTTCCTGCCCCACCTGAAGTTGCAATGCGCATGTTTAGAGATCAGGGTGGTCCCCCTCCGTTTGAAGGTGGTGGCAGAAATGCA
AGGCCTGGACCCCAACTAGGTGGGCCAGCCCCAATTCTTCTATCACCAGCCTTCCGACAGGATCCTCGACGTATACGCAGCTATCAAGACCTAGATGCCC
CGGAGGATGAAGTCACGGTTATAGATTACAGGAGTTTGTAG
AA sequence
>Potri.009G158600.1 pacid=42770853 polypeptide=Potri.009G158600.1.p locus=Potri.009G158600 ID=Potri.009G158600.1.v4.1 annot-version=v4.1
MAEVINMPVDSLDHRGGNGGGGGRDRKDKPPTDDPQSSPPPPPPTQRRRERDSRERREDFDRPPNRRGGDYYDRNRSPPPPQREREREYKRRSSVSPPPP
VPYRDRRHSPPQRRSPPYKRSRREDGGYDARRGSPRGGFGGGDRRFGYDYGGGYDREMGGRPGYGEERPHGRYMGRGGGYQGGPPDWELGRGGYGNTSNV
VPAQREGLMSYKQFIQELEDDILPSEAERRYQEYKSEYISTQKRVFFEAHKDEEWLKDKYHPTNLVAVIERRNELARKVAKDFLLDLQSGTLDLGPGVNA
ISSNKSGQASDPNSDDDAETGGKRRRHGRPPAKDTDLSAAPKAHPVSSEPKRIQVDVEQAQTLVRKLDSEKGVEENILSGSENDKMSREKSHGSSTGPVI
IIRGLTSVKGLEGVELLDTLITYLWRVHGLDYYGMIETNEAKGLRHVRAEGKSSDTSNSGTEWEKKLDSHWQERLRGQDPLEKMTAKEKIDATAVEGLDP
YVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHLELVMELTAKVREELYYQNYMNDSDAPGGTPVMQQSMPKDKPQRRRLGPLKDERGNRRERD
NRANGNERFDRSENPQSGDFQSNDGPDGGNRDEAMFDTFGGQGIHVPSPFPSDIAPPPVLMPVPGAGPLGPFVPAPPEVAMRMFRDQGGPPPFEGGGRNA
RPGPQLGGPAPILLSPAFRQDPRRIRSYQDLDAPEDEVTVIDYRSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27100 C2H2ZnF SE C2H2 zinc-finger protein SERRA... Potri.009G158600
[exp]
0 1
AT2G27100 C2H2ZnF SE C2H2 zinc-finger protein SERRA... Potri.004G196400
[exp]
3.00 0.8946
AT2G22010 RKP related to KPC1 (.1.2) Potri.005G083800
[exp]
3.87 0.8779
AT4G08350 GTA2, GTA02 global transcription factor gr... Potri.009G124200
[exp]
5.65 0.8833
AT2G18900 Transducin/WD40 repeat-like su... Potri.006G166500
[exp]
6.92 0.8540
AT3G55320 ABCB20, PGP20 ATP-binding cassette B20, P-gl... Potri.008G050400
[exp]
9.16 0.8415
AT3G10650 AtNUP1 unknown protein Potri.008G014800
[exp]
10.67 0.8595
AT5G44750 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG O... Potri.009G094400
[exp]
13.03 0.8599
AT4G21710 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-dir... Potri.004G043200
[exp]
13.22 0.8589
AT2G29190 APUM2 pumilio 2 (.1.2) Potri.001G243400
[exp]
15.00 0.8324
AT3G03140 Tudor/PWWP/MBT superfamily pro... Potri.013G081400
[exp]
16.70 0.8167

Potri.009G158600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.