Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27090 746 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 284 / 2e-85 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 174 / 4e-45 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 167 / 5e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 166 / 8e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 166 / 3e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 163 / 7e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 162 / 4e-41 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT3G51290 140 / 3e-34 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G20530 125 / 7e-30 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197700 [exp] 1162 / 0 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 329 / 3e-101 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 325 / 1e-99 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 209 / 1e-57 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 202 / 4e-55 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 193 / 6e-52 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 181 / 2e-47 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 172 / 2e-44 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 167 / 6e-43 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025550 [exp] 823 / 0 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 627 / 0 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 305 / 2e-92 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 304 / 3e-92 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 198 / 2e-53 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 194 / 6e-52 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 186 / 2e-50 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 189 / 4e-50 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10015534 [exp] 168 / 1e-43 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 169 / 2e-43 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.009G159000.2 pacid=42771481 polypeptide=Potri.009G159000.2.p locus=Potri.009G159000 ID=Potri.009G159000.2.v4.1 annot-version=v4.1 ATGGGGGCTTCAAACTCTAAAACAGAAGAAGATAAGGTTTTGCAGCTTTGTCGTGAAAGAAAGAGATTTGTTAGGCGAGCACTTGATGGCAGGTGCTCAC TAGCAGCTGCTCATATTATGTATATTCAGTCACTGAGAAGTACAGGAACTGCTATTAGGAAGTTCGTTGAACCTGAAGTTCTGTTTGAATCTTCTTTGTA CACCTCCACTAATGCAACGCCAGAGCCACTTGCTTTGACTGAGAAGTCTATTTCCCATTTCTCAGTCTCCTCTCCATCTTTATCTCACCCTGTTGATGCA GCTGAAAACCTTTCTCCATCACCATCTCCTCCCAGCTCAAGTCGGATTCAGGCACATCATATGAAATTTTGGGGCTTTTCTTCTAAAAAAGTTGAAGAGA AATCTCCTGTAGTTGTTACAGGGACCGTAACCTCATCCAGTACCCCCCAAAATACCACACCTCGTTCCACTGAAAAACATGGAACATCACAGTTTGAAGA TTCATCAGTCCCACCAGGGATTCAACAATGGGATTACTTTGAACTTTTTCACCCGATTGACCAGCAATTTTCTTTCCAAGATGCAAGGCAAATGAACCAT GGGTTGGACAGTGCTGATGATTTAAGAAGGCTCAGGGAAGAGGAAGGAATTCCTGAGCTGGAAGATGAAGAAGAGAAAGCTTCGATTCATGAAAGTGCCG AGACAGAGGGTTCAGAAGATGAATTTGATGACCCTCCTGCAGAGACTTTGGTTCGAAGTTTTGAAAATCTTAATAGGATAAATGATCATGTTGCACCTAG TGCCTCACCAACCATGCCTTCTGCAGGGAGTGCAGCTTCAGAAACAGAGTTATTGAATGGGGAGAAAGGTAACTCTCCTGGTTTGTCACCATTAAGAACT CCATTGTCAGCAGTTACTATTTCAGCTGACAAAAAGAAAACACCAATGAAGGAAGATCGATCAGCAAATAAGGTTTCCCCTAAGGACTTCTTTTCAAGCA TGAAAGATATTGAATATCTCTTTATAAAAGCTTCTGACTCTGGGAAAGAAGTTCCAAGGATGCTTGAAGCCAATAAATTGCATTTCCGTCCATTAGCCCC TGGAAAAGAAAATGGATCTCTGGCATCTACATTCTTCAAGGCCTGTTTTTCTTGTGGGGAAGACCCTAGTCAACTGCAAGAAGAGCCTGCCCAAAAGGAT ACAAAGTACTTAATTTGGCATAGGACGACATCGTCACGGTCATCTTCATCCAGGAATCCTCTTGGATCAAATGCCAAGGATGATTCAGATGATCAGGCTG GCAATCTTTTTGATAATTTTTGTATGATCTCCGGCAGTCATGCTTCTACCTTAGACAGGCTATATGCGTGGGAGAGGAAACTTTATGATGAAGTGAAGGC TAGTGAGATGCTCAGAAGGGAGTATGACATGCGCTGTAGAACTTTAAGACAACTGGAATCCAGTGGAAAAAGTCTCCATAATATCAAAATTGATAAAACT CGTGCTGTTGTTAAAGATCTGCACTCGAGAATCAGAGTTGCCCTTCACAGAATTGATTCCATATCAAAGAGGATTGAGGAATTACGGGACAAAGAGCTCC AGCCACAACTTGAGGAATTAATTGAAGGGCTGAGTCGGATGTGGGAAGTGATGTTTGAATGCCACAAGCTTCAGCTCAACATCATTACAGTAGCATTCAA CAATGGTAACGCCAAATTCTCTATACAGTCAGAGTCACATCGGCAGGTTACTGTCCATCTCGAAAAAGAACTAAGCTCTCTATCTTCAAGCTTTACAAAG TGGATTGAGGCTCAGATGTCGTACCTGGAGGTTATAAACAGTTGGCTTTTTAAATGTGTCTTTTTTACACAAAAACCTACCAAGAGAAAAAGGAGGCAAA CGCCCCCTTCGACGGCCTTAAGATCAAATGGCCCTCCTGTATATGCCACCTGTGGTGCCTGGTTGGACGGTCTTAATGGCTTGCCTGTAAAGGAAGTTGC AGAATCTGTAAGGCTTTTAGCAGCTGAAACTGCTCACTTTTTGCCACGCCAAGAGAAGAACCAAGGGAAGAAATCTAAATTCTCATCATGGAAGGCTGAT AACGGAAGTGAATCAGCAGTTAACATGTTGAGAGATGAGGCCTCAGAGGATTTTAATTTAGGTTTTGAGCATTTTCGATCAAGCTTGGAGGGATTTCTTG GCCAGTTGAACAACTTTGCTGAGAAATCTGTCGAGATGTATGCAAAACTTGAAAAGGAAATCCATGGTAGCAAGAGTAATTATGAAAGAGTGATGTCCCA ACAGCAAGTTAATTGA
AA sequence Show only first row Show all	>Potri.009G159000.2 pacid=42771481 polypeptide=Potri.009G159000.2.p locus=Potri.009G159000 ID=Potri.009G159000.2.v4.1 annot-version=v4.1 MGASNSKTEEDKVLQLCRERKRFVRRALDGRCSLAAAHIMYIQSLRSTGTAIRKFVEPEVLFESSLYTSTNATPEPLALTEKSISHFSVSSPSLSHPVDA AENLSPSPSPPSSSRIQAHHMKFWGFSSKKVEEKSPVVVTGTVTSSSTPQNTTPRSTEKHGTSQFEDSSVPPGIQQWDYFELFHPIDQQFSFQDARQMNH GLDSADDLRRLREEEGIPELEDEEEKASIHESAETEGSEDEFDDPPAETLVRSFENLNRINDHVAPSASPTMPSAGSAASETELLNGEKGNSPGLSPLRT PLSAVTISADKKKTPMKEDRSANKVSPKDFFSSMKDIEYLFIKASDSGKEVPRMLEANKLHFRPLAPGKENGSLASTFFKACFSCGEDPSQLQEEPAQKD TKYLIWHRTTSSRSSSSRNPLGSNAKDDSDDQAGNLFDNFCMISGSHASTLDRLYAWERKLYDEVKASEMLRREYDMRCRTLRQLESSGKSLHNIKIDKT RAVVKDLHSRIRVALHRIDSISKRIEELRDKELQPQLEELIEGLSRMWEVMFECHKLQLNIITVAFNNGNAKFSIQSESHRQVTVHLEKELSSLSSSFTK WIEAQMSYLEVINSWLFKCVFFTQKPTKRKRRQTPPSTALRSNGPPVYATCGAWLDGLNGLPVKEVAESVRLLAAETAHFLPRQEKNQGKKSKFSSWKAD NGSESAVNMLRDEASEDFNLGFEHFRSSLEGFLGQLNNFAEKSVEMYAKLEKEIHGSKSNYERVMSQQQVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27090			Protein of unknown function (D...		Potri.009G159000 [exp]	0	1
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.011G118800 [exp]	1.00	0.9187
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.010G163000 [exp]	3.46	0.8861	Pt-WRKY3.2
AT2G33490			hydroxyproline-rich glycoprote...		Potri.003G166300 [exp]	5.74	0.8488
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	6.24	0.8756
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.016G069700 [exp]	6.32	0.8694	Pt-BLH1.2
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	6.70	0.8688
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.002G125900 [exp]	9.48	0.8376
AT5G35460			unknown protein		Potri.006G145600 [exp]	9.53	0.8462
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	15.42	0.8535
AT3G56680			Single-stranded nucleic acid b...		Potri.008G021900 [exp]	15.49	0.8486

Compare expression of checked genes

Potri.009G159000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.