Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EIN3A,EIN3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20770 704 / 0 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) AT2G27050 649 / 0 EIL AtEIL1, EIL1 ETHYLENE-INSENSITIVE3-like 1 (.1) AT1G73730 367 / 2e-119 EIL AtEIL3, ATSLIM, SLIM1, EIL3 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) AT5G21120 350 / 1e-113 EIL EIL2 ETHYLENE-INSENSITIVE3-like 2 (.1) AT5G10120 316 / 5e-101 EIL Ethylene insensitive 3 family protein (.1) AT5G65100 315 / 1e-99 EIL Ethylene insensitive 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197400 [exp] 1076 / 0 AT3G20770 724 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.008G011300 [exp] 683 / 0 AT3G20770 560 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.010G247500 [exp] 679 / 0 AT3G20770 578 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.001G015900 [exp] 389 / 8e-128 AT1G73730 494 / 8e-170 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.003G210500 [exp] 379 / 9e-124 AT1G73730 516 / 5e-178 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.001G015966 [exp] 166 / 2e-47 AT1G73730 239 / 6e-76 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031817 [exp] 377 / 2e-123 AT1G73730 555 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10031245 [exp] 370 / 2e-120 AT1G73730 556 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10014331 [exp] 305 / 7e-97 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1) Lus10041709 [exp] 296 / 9e-93 AT5G65100 358 / 6e-119 Ethylene insensitive 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04873 [poplar] [flax] EIN3 Ethylene insensitive 3
Representative CDS sequence Show only first row Show all	>Potri.009G159200.3 pacid=42772138 polypeptide=Potri.009G159200.3.p locus=Potri.009G159200 ID=Potri.009G159200.3.v4.1 annot-version=v4.1 ATGTCGATGTTTGATGAGATGGGGTTTTGTGGTGACATAGATTTCTTTTGTGCTCCGCTTGTGGAAGGAGATGTGGCTGCTCCGCAAGCTGAACCAGAGG CTACTGTGGATGATGACTATAGTGATGAGGAGATTGATGTTGACGAGCTTGAGCGAAGGATGTGGAGGGACAAAATGCGTCTCAAAAGGCTAAAAGAACA GACCAAAAGTAAGGAGGGGATTGATATTGCTAAGCAGCGTCAGTCCCAGGAGCAGGCCAGGAGGAAGAAGATGTCGAGGGCACAAGATGGGATCTTGAAG TACATGTTGAAGATGATGGAGGTTTGTAAAGCTCAAGGTTTTGTTTATGGGATTATAACGGAGAAGGGAAAGCCAGTGACTGGGGCATCGGATAATCTTC GAGAATGGTGGAAGGACAAAGTCAGGTTTGATCGAAATGGTCCAGCTGCCATAACAAAGTACCAAGCGGATAATTCAATCCCAGGGAAGAACGAGGGTAG TAATCCAATTGGTCCAACTCCACACACCTTGCAGGAGCTTCAAGATACCACCCTGGGTTCACTCTTGTCCGCGCTGATGCAGCATTGTGACCCTCCCCAG AGGCGGTTTCCACTAGAGAAAGGTGTTTCTCCCCCATGGTGGCCTTCTGGAAACGAAAAATGGTGGCCTCAATTGGGGTTGCCTGAGGACCAAGGCCCCC CACCTTACAAGAAGCCTCATGATTTGAAGAAGGCATGGAAGGTGGGTGTTCTCACAGCAGTGATTAAGCATATGTCTCCTGATATTGCCAAGATCCGCAA GCTTGTGAGACAGTCCAAGTGCTTGCAGGACAAGATGACAGCCAAGGAAAGTGCTACTTGGCTTGCAATTATCAACCAAGAGGAGTCATTGGCTCGTGAG CTCTACCCTGACTCCTGCCCACCATTGTCATCATCTGCAGGGAGTGGATCTTTAGTCATTAATGATTGCAGTGAGTATGATGTTGAAGGAGCTGAAGATG AGCCAGACTTTGACGGGCAAGAGTGCAAACCTGAGACTCTCACCTATTCTAATTTAGGGATGGAAAGAATGAGAGAACGGCTGCCTCTTCGACAACAGCC ATATCCAATTAAAGGAGAAGTTATCTCCAGCATGGATTTTATTCAAAAGAGAAAGCCATCCAGTGATATAAACATGATGGTGGATCAGAGGATCTACACA TGTGAGGCAGTTCAATGTCCTTACAGTCAAATTCGACTGGGTTTCCCCGACAGGGTTTCTAGGGACAATCATCAACTGAACTGCCCCTTCAGAAGCACTT TATTAGAATTTGGACGATCAAATTTTCACATTAATGAAGTCAAGCCTGTCATCTTTCCTCAGCCATCTGTACAATCCAAGCCAGCTGCTCCCTTGGTGAA CCCTGCCCCCCCTTCCTTTGATTTATCAGGAGTTCCAGAAGATGGTCAAAAGATGATCAGCGAGCTCATGTCAATCTACGACACTAATATCCAAGGCAAC AAGAACACAAATCCTGTTAACAATCTGGTTACAGGAGGTCACCATGTTTTCCAGCCGAAAATCCAACATCAACAGGACAATCACAATGTCTTCCAGCCAA AAATCCAACACCAACAGGGCAATCACTTCCGAAGTCAAGGCAATGTGATCGATGGAAATGTCTTCAAAGAGTCCAACATCAACTCTAACCATCAATTGTT TTCGCAGGAAGGCGGTCAGTTTGACAGGTTTAAGCCTTTGAATTCTCCATTTGAGACCAGCCAAAACAACAGCAGCTTCAACTTGATGTTCAGCTCCCCC CTCGATTTGTCCTCTTTCGAGTACAAAGAGGATCTACAAGGACTGGGAATGGATTCTCTGCCAAAGCATCAGCAGGATGTTTCAATCTGGTTCTAA
AA sequence Show only first row Show all	>Potri.009G159200.3 pacid=42772138 polypeptide=Potri.009G159200.3.p locus=Potri.009G159200 ID=Potri.009G159200.3.v4.1 annot-version=v4.1 MSMFDEMGFCGDIDFFCAPLVEGDVAAPQAEPEATVDDDYSDEEIDVDELERRMWRDKMRLKRLKEQTKSKEGIDIAKQRQSQEQARRKKMSRAQDGILK YMLKMMEVCKAQGFVYGIITEKGKPVTGASDNLREWWKDKVRFDRNGPAAITKYQADNSIPGKNEGSNPIGPTPHTLQELQDTTLGSLLSALMQHCDPPQ RRFPLEKGVSPPWWPSGNEKWWPQLGLPEDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEESLARE LYPDSCPPLSSSAGSGSLVINDCSEYDVEGAEDEPDFDGQECKPETLTYSNLGMERMRERLPLRQQPYPIKGEVISSMDFIQKRKPSSDINMMVDQRIYT CEAVQCPYSQIRLGFPDRVSRDNHQLNCPFRSTLLEFGRSNFHINEVKPVIFPQPSVQSKPAAPLVNPAPPSFDLSGVPEDGQKMISELMSIYDTNIQGN KNTNPVNNLVTGGHHVFQPKIQHQQDNHNVFQPKIQHQQGNHFRSQGNVIDGNVFKESNINSNHQLFSQEGGQFDRFKPLNSPFETSQNNSSFNLMFSSP LDLSSFEYKEDLQGLGMDSLPKHQQDVSIWF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.009G159200 [exp]	0	1	EIN3A,EIN3.2
AT4G17900			PLATZ transcription factor fam...		Potri.003G092800 [exp]	1.00	0.9285
AT4G15120			VQ motif-containing protein (....		Potri.016G017900 [exp]	2.23	0.8841
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	2.44	0.9202
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.011G071400 [exp]	4.47	0.8538
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	6.00	0.8865	Pt-EIL3.2
AT5G41350			RING/U-box superfamily protein...		Potri.003G129900 [exp]	9.48	0.8797
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.009G056400 [exp]	10.09	0.8436
AT3G60850			unknown protein		Potri.014G070200 [exp]	10.95	0.8621
					Potri.003G139000 [exp]	11.53	0.8581
AT4G28400			Protein phosphatase 2C family ...		Potri.006G081400 [exp]	12.40	0.8686

Compare expression of checked genes

Potri.009G159200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.