Plant FIBer expression Database

Potri.009G159300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04600 692 / 0 Nucleotidylyl transferase superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025538
[exp]
705 / 0 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3)
Lus10026754
[exp]
687 / 0 AT3G04600 692 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2.3)
Lus10017122
[exp]
474 / 2e-166 AT3G04600 471 / 9e-166 Nucleotidylyl transferase superfamily protein (.1.2.3)
Lus10018331
[exp]
99 / 8e-24 AT3G04600 102 / 2e-25 Nucleotidylyl transferase superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00579 tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence
>Potri.009G159300.1 pacid=42772561 polypeptide=Potri.009G159300.1.p locus=Potri.009G159300 ID=Potri.009G159300.1.v4.1 annot-version=v4.1
ATGGAGGAGGAGAAGAGAGAGACTCAAAACCAACTAGCAGAAGAAGAGGACCAAATAGTCAACCCATGGGAAGTCGCCGCCAAAGACGGCGGCAAGATTG
ATTATGACAAACTTATCGACAAATTCGGCTGTCAAAGACTCGACCAAACACTAATTGACCGTGTCCACCGCCTCACCGGTCGCCCTCCCCACGTCTTCCT
CCGCCGTGGCGTCTTCTTCGCCCACCGTGACTTCAACGAAATCCTCGACGCCTATGAAAAGGGTAAAAAATTCTACCTTTACACCGGCCGTGGTCCTTCC
TCTGAAGCATTGCATCTAGGGCATCTCGTTCCGTTTATGTTCACTAAGTATTTGCAAGATGTGTTTAGGGTTCCGCTTGTGATACAGTTGACTGATGATG
AGAAATGTATGTGGAAGAATTTAACCGTGGAGGAAAGTCAGAGGCTTGCACGTGAGAATGCTAAGGATATTATTGCTTGTGGGTTTGATATCACGCGGAC
TTTTATTTTCTCGGATTTCGATTATGTTGGTGGTGCATTCTACAAGAACATGGTGAAGGTTGCAAAGTGTGTCACATTGAATAAGGTCCAGGGTATTTTT
GGTTTCTCGGGTGAAGATCATATTGGGAAAATCAGTTTTCCGCCCGTGCAGGCAGTTCCATCATTTCCCAGTTCATTCCCACACCTTTTCTCGGGAAAAG
ACGACCTCCGTTGCCTAATACCTTGTGCAATTGATCAGGATCCATATTTCAGAATGACGCGGGATGCTGCTCCTCGGATAGGATATCACAAACCTTCATT
GATTGAGTCAACATTCTTCCCTGCGCTGCAGGGGGAGACAGGAAAAATGTCTGCTAGTGATCCAAATTCTGCCATCTATGTGACTGATTCAGCTAAAGTC
ATTAAGAGTAAGATCAACAAGTATGCGTTCTCTGGTGGGCAAGATTCTGTAGAGAAACACAGACAACTTGGAGCAAATCTTGAGGTAGATATTTCAGTCA
AATACCTGAACTTTTTCCTTGAGGATGATGCTGAGCTTGAACACATTAAGAAGGAGTATGCTGCAGGACGTATGCTAACAGGAGAAGTGAAGGGCCGCCT
TGGCTCGGTTTTGTCTGAGATAGTAGAAAGACATCGTGCAGCTCGAGCGAGTGTGACTGATGAAGTTGTGGATGCTTTTATGGCTGCACGGCCCCTTCCC
AATATGTTTGACTGA
AA sequence
>Potri.009G159300.1 pacid=42772561 polypeptide=Potri.009G159300.1.p locus=Potri.009G159300 ID=Potri.009G159300.1.v4.1 annot-version=v4.1
MEEEKRETQNQLAEEEDQIVNPWEVAAKDGGKIDYDKLIDKFGCQRLDQTLIDRVHRLTGRPPHVFLRRGVFFAHRDFNEILDAYEKGKKFYLYTGRGPS
SEALHLGHLVPFMFTKYLQDVFRVPLVIQLTDDEKCMWKNLTVEESQRLARENAKDIIACGFDITRTFIFSDFDYVGGAFYKNMVKVAKCVTLNKVQGIF
GFSGEDHIGKISFPPVQAVPSFPSSFPHLFSGKDDLRCLIPCAIDQDPYFRMTRDAAPRIGYHKPSLIESTFFPALQGETGKMSASDPNSAIYVTDSAKV
IKSKINKYAFSGGQDSVEKHRQLGANLEVDISVKYLNFFLEDDAELEHIKKEYAAGRMLTGEVKGRLGSVLSEIVERHRAARASVTDEVVDAFMAARPLP
NMFD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G04600 Nucleotidylyl transferase supe... Potri.009G159300
[exp]
0 1
AT5G16770 MYB ATMYB9 myb domain protein 9 (.1.2) Potri.019G118700
[exp]
15.36 0.7313
AT5G07900 Mitochondrial transcription te... Potri.001G034900
[exp]
23.36 0.7201
AT2G26470 unknown protein Potri.002G250400
[exp]
32.12 0.7170
AT1G79810 PEX2, TED3, ATP... ARABIDOPSIS PEROXIN 2, Pex2/Pe... Potri.001G186000
[exp]
38.01 0.7146 Pt-TED3.2
AT3G60450 Phosphoglycerate mutase family... Potri.014G054800
[exp]
51.84 0.6689
AT3G11591 unknown protein Potri.008G011620
[exp]
59.39 0.7009
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.004G053100
[exp]
67.17 0.6901
AT4G15940 Fumarylacetoacetate (FAA) hydr... Potri.010G011000
[exp]
87.98 0.6118
AT1G67325 Ran BP2/NZF zinc finger-like s... Potri.001G056000
[exp]
108.61 0.5601
AT5G49160 MET2, DMT1, DMT... METHYLTRANSFERASE I, METHYLTRA... Potri.018G138000
[exp]
114.16 0.6254 MET1.1

Potri.009G159300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.