Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08370 376 / 1e-129 DCP1, ATDCP1 decapping 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208600 [exp] 405 / 3e-141 AT1G08370 335 / 1e-113 decapping 1 (.1) Potri.016G075200 [exp] 384 / 1e-132 AT1G08370 294 / 1e-97 decapping 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034186 [exp] 481 / 4e-171 AT1G08370 380 / 2e-131 decapping 1 (.1) Lus10043399 [exp] 471 / 9e-167 AT1G08370 375 / 2e-129 decapping 1 (.1) Lus10017007 [exp] 384 / 1e-132 AT1G08370 351 / 8e-120 decapping 1 (.1) Lus10021331 [exp] 317 / 1e-105 AT1G08370 305 / 1e-100 decapping 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF06058 [poplar] [flax] DCP1 Dcp1-like decapping family
Representative CDS sequence Show only first row Show all	>Potri.009G160200.1 pacid=42770859 polypeptide=Potri.009G160200.1.p locus=Potri.009G160200 ID=Potri.009G160200.1.v4.1 annot-version=v4.1 ATGCCACAGAATGGGAAATTGATGCCGAACATTGATCAACAGAGCACAAAGCTCCTTAATTTAACAGTTCTTCAACGAATCGATCCTTTAGTTGAAGAAA TTCTCATCACTGCTGCTCATGTCACTCTCTACCAGTTCAATATCGACCTTACCCAATGGAGTCGGAAAGATGTCGAAGGATCTCTCTTTGTAGTTAAAAG GAATATGCAACCTAGGTTTCAGTTTATTGTGATGAATCGCCGGAATACAGATAATTTGGTGGAAAATCTTTTGGGAGATTTTGAGTACGAGGTTCAGGTT CCGTATCTTCTGTATCGAAATGCAGCCCAAGAAGTGAATGGTATTTGGTTTTATAATGCACGCGAGTGTGAAGAGGTTGCTAATCTTTTTAGCAGGATAC TTAATGCATACTCCAAGGTGCCTCAGAAGCCAAAGGTATCACTATCAACAACAAAAAGCGAGTTTGAGGAATTAGAAGCTGTACCAACTATGGCAGTTAT GGATGGTCCTCTGGAGCCATCATCTGCAAGTGCTTCGGTTGTCTCCGATGTGCCTGATGATCCTGCCTTTGTGAACTTCTTTAGTACAGCTATGACAATT GGGAATGCATCAGCTGCTGCAGTTGCTGGACAGTCTTACCAATCCTCAATTCCAATTCCATTACACTCCCAACTGACTAGTGTTGCCTCCAGCACCATGC CCACCTTGCAAATACCATCTACTCCTTTATCAGCATCAATTCCTTTAATGCCACTGCTTGATGTCTCTGATGTCAGCAGCAGCAACAACCGGACAGCTAA CCTTGTAAAGCCTTCTTTTTTTGTTCCTCCATCTTCTACTCGGATGATGCCACCTGTCTCTTCTTCTATGCCTACTGCTCCTCCACTTAATCCTCCTACA AGTCTACACCGCCCATATGGTGCTCCATTGCTTCAACCCTTTCCACCACCCACTCCTCCACCATCTCTCACTCCTGCTTCTGTTCCCAGTCCAAATCATG GGCCAGTTATCAGCAAAGACAAAGTCCGAGATGCACTACTGGCACTTGTTCAGGATGATCAATTCATTGACATGGTTTATCGTACCCTTCTGAATGCACA CCATTCTTGA
AA sequence Show only first row Show all	>Potri.009G160200.1 pacid=42770859 polypeptide=Potri.009G160200.1.p locus=Potri.009G160200 ID=Potri.009G160200.1.v4.1 annot-version=v4.1 MPQNGKLMPNIDQQSTKLLNLTVLQRIDPLVEEILITAAHVTLYQFNIDLTQWSRKDVEGSLFVVKRNMQPRFQFIVMNRRNTDNLVENLLGDFEYEVQV PYLLYRNAAQEVNGIWFYNARECEEVANLFSRILNAYSKVPQKPKVSLSTTKSEFEELEAVPTMAVMDGPLEPSSASASVVSDVPDDPAFVNFFSTAMTI GNASAAAVAGQSYQSSIPIPLHSQLTSVASSTMPTLQIPSTPLSASIPLMPLLDVSDVSSSNNRTANLVKPSFFVPPSSTRMMPPVSSSMPTAPPLNPPT SLHRPYGAPLLQPFPPPTPPPSLTPASVPSPNHGPVISKDKVRDALLALVQDDQFIDMVYRTLLNAHHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.009G160200 [exp]	0	1
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	5.56	0.8950
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	15.36	0.8692
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G045300 [exp]	15.62	0.7884
					Potri.006G056101 [exp]	17.05	0.8719
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.001G320400 [exp]	18.33	0.8630
AT2G41760			unknown protein		Potri.006G051500 [exp]	24.81	0.8564
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.017G000300 [exp]	26.15	0.8556	Pt-MTHFR1.1,MTHFR2
AT1G53400			Ubiquitin domain-containing pr...		Potri.001G387400 [exp]	26.70	0.8136
AT3G54040			PAR1 protein (.1)		Potri.006G094300 [exp]	28.28	0.8234
AT4G29680			Alkaline-phosphatase-like fami...		Potri.006G150900 [exp]	28.86	0.7951

Compare expression of checked genes

Potri.009G160200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.