Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27330 99 / 5e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 92 / 8e-25 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 78 / 6e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 79 / 1e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 76 / 6e-19 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G39260 74 / 1e-18 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT2G21660 76 / 2e-18 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT2G37510 74 / 3e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13850 73 / 1e-17 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G19030 72 / 5e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208500 [exp] 106 / 7e-31 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 85 / 5e-22 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 81 / 1e-20 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 81 / 2e-20 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G207100 [exp] 79 / 2e-19 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.008G022280 [exp] 77 / 3e-19 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G057400 [exp] 79 / 6e-19 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 76 / 6e-18 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.008G022200 [exp] 77 / 1e-17 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013306 [exp] 101 / 6e-29 AT5G06210 94 / 3e-25 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022551 [exp] 82 / 8e-21 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 81 / 9e-21 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10023758 [exp] 80 / 3e-20 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023569 [exp] 79 / 9e-20 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10029426 [exp] 82 / 2e-19 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10040454 [exp] 79 / 3e-19 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10003980 [exp] 77 / 3e-19 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026344 [exp] 77 / 4e-19 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 77 / 4e-19 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.009G160300.2 pacid=42770737 polypeptide=Potri.009G160300.2.p locus=Potri.009G160300 ID=Potri.009G160300.2.v4.1 annot-version=v4.1 ATGGCGACTTTAACAGGAATTACCCGAAGCTCTCTCAAAGTTTTCTCTCAACCGCAACTTTATCCTCAACCCCTACTGTTCTTTTCCAAAGGATTCTCTG CTAAAGTTTTTGTCAAAGGTTTATCTTTCTCCAGTACAGAGAAGAAAATAGCTGAAGCATTTTCAGAATTTGGAGAGGTCATTGAAGCTAAAATAGTAAT GGACAAAGCCAGAAAGAGACCTAAAGGTTATGGGTTTGTAACCTTCGCTAAGAAGGACGCCGCTGAGAAGGCTTGTGAGGGAATGAATGGGAAGCTGCTA GATGGACGAGCCATTTATGTGAGGTTTTGA
AA sequence Show only first row Show all	>Potri.009G160300.2 pacid=42770737 polypeptide=Potri.009G160300.2.p locus=Potri.009G160300 ID=Potri.009G160300.2.v4.1 annot-version=v4.1 MATLTGITRSSLKVFSQPQLYPQPLLFFSKGFSAKVFVKGLSFSSTEKKIAEAFSEFGEVIEAKIVMDKARKRPKGYGFVTFAKKDAAEKACEGMNGKLL DGRAIYVRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27330			RNA-binding (RRM/RBD/RNP motif...		Potri.009G160300 [exp]	0	1
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.001G070301 [exp]	2.00	0.8309
AT5G01660			unknown protein		Potri.008G074200 [exp]	4.89	0.8070
					Potri.011G144433 [exp]	8.77	0.7657
					Potri.008G185350 [exp]	9.38	0.8214
AT5G45660			unknown protein		Potri.011G076600 [exp]	12.32	0.7917
					Potri.010G104050 [exp]	20.14	0.6848
AT1G12400			Nucleotide excision repair, TF...		Potri.009G138800 [exp]	20.44	0.7289
					Potri.019G001550 [exp]	25.00	0.7850
AT4G07515			Protein of unknown function (D...		Potri.004G110610 [exp]	27.56	0.7573
AT2G40935			PLAC8 family protein (.1.2.3)		Potri.006G024900 [exp]	31.17	0.7411

Compare expression of checked genes

Potri.009G160300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.