Plant FIBer expression Database

Potri.009G160400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44330 805 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G198200
[exp]
955 / 0 AT3G44330 820 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005197
[exp]
762 / 0 AT3G44330 766 / 0.0 unknown protein
Lus10013307
[exp]
741 / 0 AT3G44330 743 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF05450 Nicastrin Nicastrin
Representative CDS sequence
>Potri.009G160400.1 pacid=42772101 polypeptide=Potri.009G160400.1.p locus=Potri.009G160400 ID=Potri.009G160400.1.v4.1 annot-version=v4.1
ATGCAATCAAATCCAAAAACTATGTCGTCGAAGAATCCGCGGGAGCGTCAAATGCTAGAATCAATCTACTCAATGGTTGCTCTCGTCTTCATCCTTGTCA
CTTGCGTCGACCTCTGCGACGCCGCCACCGTCGTCGATGTCTACCGCTTAATCCAATACGATATATCCGGCGTTCCTTTCGGATCTCGTTTCGCCACCCT
GAACCACCACGCCGGCTCCTTGCATTTCGCAGCAGGCGTCGATCTTTCTCGCACTGTCCTCATCATTCCTGTTCGCGAATTGAACATCACTTTCGTTAAA
GAATATATCTCGCAAAGAAAGCCTCTTGGAGGATTATTGTTTTTGCTGCCGCAAATGTTTAATTTTGAAAATAGAGAAGCCGCGACGGAGAGTAAGTATC
AAATTCGTGAGAAGGAGCTGATGAAGACTGTTTTGGTGGAGCTTGAACGATTGCTTATTCATGCCAATATACCTTATCCAGTATATTTTGCTTTTGAGGA
TGATGACATTGATGCTGTGTTGGCTGATGTCAAGAGGAGTGATGTCTCTGGTCAGCCTGCTACTGCGACGACTGGCGGCTATAAGCTTGTTGTCTCTGCT
CCAGAACCTAAGAGAATTGCATCTCCCAGCATCACAAACATTCAGGGGTGGTTGCCAGGACTGAAAGCAGATGGAGATCCAAATCAACTTCCAACTATTG
CTATTGTAGCATCATATGATACTTTTGGAACTGCTCCTGCATTATCTGTTGGGAGTGATAGCAATGGGAGTGGCGTTGTGGCTCTTCTTGAATTAGCTAG
GCTATTTTCTCTTCTTTATTCAAACCCAAAGACAAGAGGACGGTATAATTTACTTTTTGGGCTAACATCCGGCGGACCTTATAACTACAATGGAACTCAC
AAGTGGCTTCGGAGCTTTGATCAACGTCTACGAGAGAGCATCGATTATGCTATTTGCTTAAATAGTATTGGCTCATGGGATAATGAATTGTGGATTCATG
TGTCCAAGCCTCCTGAGAATACCTTTATTAAACAAATTTTTGAAGGTTTCTCTACTGTAGCAGAAGAACTGGGCTTTGAAGTTGGTCTCAAGCACAAGAA
AATTAATATTTCAAATCCTCGAGTAGCTTGGGAGCACGAACAGTTTTCAAAGCTGAGAGTGACGGCTGCTACCCTTTCTGAACTATCGACAGCACCTGAA
CTTTTAGAAAGCACCGGAGGTCTGTCTGATAGCAGACATTTTATTAATGAAACTGCAATAGTTAGAAGCATCAAGCTAGTTGCTGAGAGTGTTGCGAGGC
ATATCTATGGTTGCCAAGGGAAGAACATTCAAATATTTGCGGACGACACTAGTTTGGCTGTCAATGCTCCTTACATAAGATCATGGTTGGATCTTTTGTC
AAAAACACCTCGAGTGGTGCCATTTCTAACAAAGAATGATCCGTTTGTCATGGCACTGAAAAAGGAACTAGAAGATCATACTCATGAAGTAAATGTGCAT
CATGAGGTGCTTGATGGGATGTTCACACTCTATGATTCAACTAAAGCTAAACTAAATATTTATCAGGTTGCTAGCGTAACATTCGACTTGCTGTTGCTTC
TAGTGCTAGGGTCATATTTGATTATACTTTTCACTTTCCTTGTCATCACAACAAGGGGTCTTGACGATCTTATAAGTTTATTCCGACGGCCTCCTTCTCG
TAAGGTCAAAACAGCATGA
AA sequence
>Potri.009G160400.1 pacid=42772101 polypeptide=Potri.009G160400.1.p locus=Potri.009G160400 ID=Potri.009G160400.1.v4.1 annot-version=v4.1
MQSNPKTMSSKNPRERQMLESIYSMVALVFILVTCVDLCDAATVVDVYRLIQYDISGVPFGSRFATLNHHAGSLHFAAGVDLSRTVLIIPVRELNITFVK
EYISQRKPLGGLLFLLPQMFNFENREAATESKYQIREKELMKTVLVELERLLIHANIPYPVYFAFEDDDIDAVLADVKRSDVSGQPATATTGGYKLVVSA
PEPKRIASPSITNIQGWLPGLKADGDPNQLPTIAIVASYDTFGTAPALSVGSDSNGSGVVALLELARLFSLLYSNPKTRGRYNLLFGLTSGGPYNYNGTH
KWLRSFDQRLRESIDYAICLNSIGSWDNELWIHVSKPPENTFIKQIFEGFSTVAEELGFEVGLKHKKINISNPRVAWEHEQFSKLRVTAATLSELSTAPE
LLESTGGLSDSRHFINETAIVRSIKLVAESVARHIYGCQGKNIQIFADDTSLAVNAPYIRSWLDLLSKTPRVVPFLTKNDPFVMALKKELEDHTHEVNVH
HEVLDGMFTLYDSTKAKLNIYQVASVTFDLLLLLVLGSYLIILFTFLVITTRGLDDLISLFRRPPSRKVKTA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G44330 unknown protein Potri.009G160400
[exp]
0 1
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Potri.002G036600
[exp]
3.16 0.9301
AT2G34970 Trimeric LpxA-like enzyme (.1) Potri.005G045200
[exp]
4.89 0.8949
AT5G66680 DGL1 DEFECTIVE GLYCOSYLATION, dolic... Potri.007G031000
[exp]
6.24 0.9165
AT5G59410 Rab5-interacting family protei... Potri.001G241500
[exp]
9.38 0.9228
AT5G66680 DGL1 DEFECTIVE GLYCOSYLATION, dolic... Potri.005G127000
[exp]
14.07 0.8983
AT2G20420 ATP citrate lyase (ACL) family... Potri.002G259600
[exp]
15.42 0.9122
AT1G01050 ATPPA1 pyrophosphorylase 1 (.1) Potri.002G181300
[exp]
15.74 0.9130
AT1G51590 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-ma... Potri.008G007500
[exp]
16.24 0.9052 Pt-MAN1.1
AT5G55070 Dihydrolipoamide succinyltrans... Potri.011G089200
[exp]
17.74 0.8844
AT3G24350 ATSYP32, SYP32 syntaxin of plants 32 (.1.2) Potri.006G157000
[exp]
18.24 0.9067

Potri.009G160400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.