Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22330 813 / 0 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G49830 352 / 2e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G67630 348 / 8e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199100 [exp] 892 / 0 AT5G22330 788 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G096800 [exp] 375 / 9e-127 AT5G67630 764 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G118900 [exp] 365 / 1e-122 AT5G67630 758 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G127900 [exp] 42 / 0.0009 AT1G05910 1351 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.017G030900 [exp] 42 / 0.001 AT1G05910 1494 / 0.0 cell division cycle protein 48-related / CDC48-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040479 [exp] 798 / 0 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011283 [exp] 794 / 0 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011551 [exp] 360 / 2e-120 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019267 [exp] 359 / 3e-120 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027038 [exp] 42 / 0.001 AT1G05910 1546 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10025576 [exp] 42 / 0.001 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06068 [poplar] [flax] TIP49 TIP49 P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.009G160600.4 pacid=42771137 polypeptide=Potri.009G160600.4.p locus=Potri.009G160600 ID=Potri.009G160600.4.v4.1 annot-version=v4.1 ATGAATATAGAAGAAGTACAGTCCACTACCAAGAAACAGAGAATTGCTACTCACACTCATATCAAGGGCCTTGGCCTTGAGCCCAGTGGAAGAGCAATTG ATATGGCTGCTGGCTTTGTGGGTCAGAAGGAGGCTAGAGAAGCAGCTGGTCTTGTAGTTGATATGATAAAGCAGAAGAAGATGGCTGGCCGTGCTCTCCT CTTAGCTGGTCCTCCTGGAACTGGGAAGACAGCTCTGGCTCTTGGAATTTCCCAGGAACTCGGCACTAAGGTTCCATTTTGTCCAATGGTTGGATCAGAG GTATACTCGTCAGAAGTTAAGAAAACTGAGGTTTTGATGGAAAATTTTCGAAGGGCAATTGGTCTACGTGTCAAGGAGAATAAAGAGGTCTATGAGGGAG AGGTGACTGAACTCACACCCGAAGAAACTGAAAGTATAACAGGTGGCTATGGTAAAAGCATTGGTGGTGTAATTATTGGGCTAAAAACTGTCAAAGGAAC AAAGCAACTAAGATTGGAAGCCAGTATTTATGATGCCTTGATCAAGGAGAAGGTAGCTGTGGGAGATGTTATATACATTGAAGCAAATAGTGGGGCTGTC AAAAGAGTGGGTAGAAGTGATGCTTTTGCTACTGAATTCGACCTTGAAGCAGAGGAGTATGTCCCACTTCCTAAGGGAGAAGTTAGTAAAAAGAAAGAGA TAGTTCAGGATGTAACACTGCATGATCTAGATGCTGCCAATGCGAGGCCTCAAGGTGGGCAAGATATATTGTCTTTAATGGGCCAAATGATGAAGCCCAA AAAAACCGAAATCACTGACAAGCTACGACAGGAAATAAATAAGGTTGTTAATGGGTTTATTAACAAGGGTACTGCAGAGCTTGTTCCTGGAGTTCTATTC ATTGATGAGGTACATATGCTGGATATGGAGTGCTTTTCATACTTGAATCGTGCTTTGGAGAGCTCGCTGTCACCAATAGTGATCTTTGCTACAAATAGAG GAATATGTAACGTAAGAGGGACAGATATGAATAGTCCTCATGGCATCCCTGTTGACTTGTTGGACCGGTTGGTGATTATCCGAACAGAAAATTATGGTCC TGCTGAGGTGATACAGATTTTAGCACTTCGCGCGCAGGTTGAGGAACTGCACTTAGATGAAGAGAGTCTAGCCTACCTTGGAGAGATTGGACAACGCTCG TCCTTGAGGCATGCAGTTCAGCTATTATCACCTGCCAGCATTGTGGCGAAAATGAATGGTCGAGAAGAGATACGCAAGGCCGACCTCGAGGAAGTATGTG CATTATATCTCGATGCCAAGTCATCGGCCAAGTTGCTTCAGGATCAGCAGGAGAAGTACATTTCATGA
AA sequence Show only first row Show all	>Potri.009G160600.4 pacid=42771137 polypeptide=Potri.009G160600.4.p locus=Potri.009G160600 ID=Potri.009G160600.4.v4.1 annot-version=v4.1 MNIEEVQSTTKKQRIATHTHIKGLGLEPSGRAIDMAAGFVGQKEAREAAGLVVDMIKQKKMAGRALLLAGPPGTGKTALALGISQELGTKVPFCPMVGSE VYSSEVKKTEVLMENFRRAIGLRVKENKEVYEGEVTELTPEETESITGGYGKSIGGVIIGLKTVKGTKQLRLEASIYDALIKEKVAVGDVIYIEANSGAV KRVGRSDAFATEFDLEAEEYVPLPKGEVSKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPKKTEITDKLRQEINKVVNGFINKGTAELVPGVLF IDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMNSPHGIPVDLLDRLVIIRTENYGPAEVIQILALRAQVEELHLDEESLAYLGEIGQRS SLRHAVQLLSPASIVAKMNGREEIRKADLEEVCALYLDAKSSAKLLQDQQEKYIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.009G160600 [exp]	0	1
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Potri.006G005700 [exp]	2.44	0.8083
AT5G37590			Tetratricopeptide repeat (TPR)...		Potri.004G085200 [exp]	3.60	0.7001
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Potri.003G048700 [exp]	4.24	0.7622
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.009G077800 [exp]	5.74	0.7554
AT4G31985			Ribosomal protein L39 family p...		Potri.006G260500 [exp]	7.07	0.6357
AT3G03420			Ku70-binding family protein (....		Potri.017G120800 [exp]	12.96	0.6784
AT5G60390			GTP binding Elongation factor ...		Potri.010G219500 [exp]	12.96	0.7264
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	15.62	0.7416	I.2
AT4G33670			NAD(P)-linked oxidoreductase s...		Potri.001G287100 [exp]	16.43	0.6647
AT3G10860			Cytochrome b-c1 complex, subun...		Potri.013G159700 [exp]	18.76	0.6964

Compare expression of checked genes

Potri.009G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.