Plant FIBer expression Database

Potri.009G160700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27310 221 / 1e-69 F-box family protein (.1)
AT3G44326 208 / 1e-64 F-box family protein (.1)
AT2G36090 185 / 5e-56 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G199300
[exp]
385 / 8e-134 AT2G27310 248 / 3e-80 F-box family protein (.1)
Potri.006G208400
[exp]
204 / 5e-63 AT2G36090 275 / 7e-91 F-box family protein (.1)
Potri.002G054500
[exp]
114 / 1e-28 AT2G27310 122 / 2e-31 F-box family protein (.1)
Potri.005G208200
[exp]
110 / 3e-27 AT2G27310 130 / 3e-34 F-box family protein (.1)
Potri.001G452000
[exp]
97 / 2e-22 AT2G36090 115 / 2e-29 F-box family protein (.1)
Potri.017G092800
[exp]
42 / 0.0003 AT5G39250 334 / 7e-117 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021330
[exp]
209 / 3e-65 AT2G36090 266 / 2e-87 F-box family protein (.1)
Lus10013309
[exp]
204 / 4e-63 AT2G27310 247 / 4e-80 F-box family protein (.1)
Lus10017006
[exp]
201 / 6e-62 AT2G36090 255 / 4e-83 F-box family protein (.1)
Lus10028024
[exp]
112 / 8e-28 AT2G27310 158 / 4e-45 F-box family protein (.1)
Lus10003731
[exp]
112 / 9e-28 AT2G27310 160 / 3e-46 F-box family protein (.1)
Lus10031031
[exp]
42 / 0.0006 AT5G04010 106 / 4e-27 F-box family protein (.1)
PFAM info
Representative CDS sequence
>Potri.009G160700.1 pacid=42772798 polypeptide=Potri.009G160700.1.p locus=Potri.009G160700 ID=Potri.009G160700.1.v4.1 annot-version=v4.1
ATGGTTGCTCTCCCCACACCACCACCACCACCACCACCACCACCAACCACCACCATTCAAGGTGGAACCATCTCTACTCTCCACCCTGACATTCTCCAAA
CCCATATCCTCACCCTCCTCGATGGCCCAACTCTAGCTGCTACAGCCTGTGCATCATCAGAATTGCATGCTCTCTCCACAGAAGATAAACTCTGGCAAAA
AATCTGCACTTCTACTTGGCCATCTATTAATGATCCGATTGTTAGAAGCATCATCCCCACCTTCCCTTCTGGCCACCTGTCATTTTTCTCTGACTCATAT
CCTCTCCTCCACCACAACCACCATAGCTCATCGTTTCCGACTACAAGCACTGAATGCTTTGTCTCAGCAGTTGATATTTACTACAAAAATGTTCCAATTT
TCTCAAAAGTTGAAACGACTGAGACCTTTTCTGATTGGTTCAAGAGCTCTCCCTTCAGGCTTGACTTACTCGAGCCCAAAGAGTTTGTGCAGACATGGAT
ACAAAACCAACCAAGTGAAAAGGAATTGCCCGTGGAGCAGCTTGAAGAGAATATAACGTTAAGTTGGATTTTGATTGATCCAAAAGGGAGAAGGGCCATG
AATTTGTCAAGCGAGAGGCCGGTGTCAGTGCAGAGGCACTGGCTAACTGGCGAAGTGGTGGTGAAGTTTTCCAACATCATGGCCGGAGACGGGAGGGAGA
AGGAGTATGTGGAGTGTGGAGTGATGGTTTGTTGTGGGGAGAAGGAAGGAGGGGAGGTGGAGGTGAGAGAGGTAAGTATGGTAATGGAGGATATGGAAGG
GAAGAACTTGACTGGGAAGGATGGTTTGGTAATTTTGCAAGAGGCAATGGAGAGGGGGGAGAGGAGGAAAGGGAAAGGTGGCAAAGAAGGGAAAGGAAGG
TACGAGGAATTTGTTGAGAGGAAGAAGGAGAGGAAAGAAAGGATGAAGAAATTGGAAAAGGCTCTGGACATGGCCTGCATTGCTACAGGGATTGCTGTTT
TTGTGTCCTTTTGGACCTTCATTTTGTTTGGATAA
AA sequence
>Potri.009G160700.1 pacid=42772798 polypeptide=Potri.009G160700.1.p locus=Potri.009G160700 ID=Potri.009G160700.1.v4.1 annot-version=v4.1
MVALPTPPPPPPPPPTTTIQGGTISTLHPDILQTHILTLLDGPTLAATACASSELHALSTEDKLWQKICTSTWPSINDPIVRSIIPTFPSGHLSFFSDSY
PLLHHNHHSSSFPTTSTECFVSAVDIYYKNVPIFSKVETTETFSDWFKSSPFRLDLLEPKEFVQTWIQNQPSEKELPVEQLEENITLSWILIDPKGRRAM
NLSSERPVSVQRHWLTGEVVVKFSNIMAGDGREKEYVECGVMVCCGEKEGGEVEVREVSMVMEDMEGKNLTGKDGLVILQEAMERGERRKGKGGKEGKGR
YEEFVERKKERKERMKKLEKALDMACIATGIAVFVSFWTFILFG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27310 F-box family protein (.1) Potri.009G160700
[exp]
0 1
AT1G72450 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmo... Potri.003G068900
[exp]
1.00 0.9718
AT3G52430 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICI... Potri.005G068700
[exp]
2.44 0.9593
AT2G14960 GH3.1 Auxin-responsive GH3 family pr... Potri.001G298300
[exp]
2.82 0.9525 3
AT3G52450 PUB22 plant U-box 22 (.1) Potri.006G202600
[exp]
3.74 0.9527
AT3G23250 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) Potri.005G224100
[exp]
4.24 0.9531
AT1G80840 WRKY ATWRKY40, WRKY4... WRKY DNA-binding protein 40 (.... Potri.003G182200
[exp]
4.47 0.9632 WRKY40.2
AT2G44260 Plant protein of unknown funct... Potri.018G087400
[exp]
6.32 0.9463
AT5G49620 MYB ATMYB78 myb domain protein 78 (.1.2) Potri.002G191800
[exp]
6.70 0.9518
AT5G41330 BTB/POZ domain with WD40/YVTN ... Potri.001G102300
[exp]
6.92 0.9567
AT1G58290 AtHEMA1, HEMA1 Arabidopsis thaliana hemA 1, G... Potri.009G080600
[exp]
7.41 0.9567

Potri.009G160700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.