Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11590 399 / 1e-131 unknown protein AT5G22310 220 / 8e-65 unknown protein AT1G50660 139 / 1e-34 unknown protein AT3G20350 129 / 3e-31 unknown protein AT5G41620 122 / 5e-29 unknown protein AT1G64180 110 / 2e-25 intracellular protein transport protein USO1-related (.1) AT2G46250 91 / 4e-19 myosin heavy chain-related (.1) AT1G11690 43 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199500 [exp] 882 / 0 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 419 / 4e-139 AT3G11590 560 / 0.0 unknown protein Potri.006G207800 [exp] 410 / 8e-136 AT3G11590 582 / 0.0 unknown protein Potri.003G135000 [exp] 191 / 2e-52 AT5G41620 494 / 1e-167 unknown protein Potri.014G093400 [exp] 180 / 9e-49 AT5G41620 347 / 8e-111 unknown protein Potri.002G166600 [exp] 170 / 3e-45 AT5G41620 345 / 6e-110 unknown protein Potri.001G096200 [exp] 157 / 5e-41 AT5G41620 523 / 6e-180 unknown protein Potri.011G090100 [exp] 154 / 1e-39 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 118 / 9e-28 AT1G50660 390 / 1e-126 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013311 [exp] 394 / 5e-130 AT3G11590 332 / 1e-105 unknown protein Lus10005200 [exp] 382 / 6e-125 AT3G11590 322 / 1e-101 unknown protein Lus10013312 [exp] 346 / 2e-112 AT3G11590 285 / 1e-88 unknown protein Lus10017001 [exp] 327 / 2e-103 AT3G11590 587 / 0.0 unknown protein Lus10021324 [exp] 304 / 2e-93 AT3G11590 530 / 3e-180 unknown protein Lus10028746 [exp] 152 / 2e-39 AT5G41620 497 / 4e-170 unknown protein Lus10017543 [exp] 153 / 3e-39 AT5G41620 500 / 6e-170 unknown protein Lus10043111 [exp] 148 / 1e-37 AT1G50660 616 / 0.0 unknown protein Lus10032637 [exp] 147 / 2e-37 AT1G50660 625 / 0.0 unknown protein Lus10021521 [exp] 143 / 9e-36 AT1G50660 750 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G160900.1 pacid=42771208 polypeptide=Potri.009G160900.1.p locus=Potri.009G160900 ID=Potri.009G160900.1.v4.1 annot-version=v4.1 ATGGAGGCAAAAAGCAGAGAGCAACAGCACTGTAAGGTAAGAAAGAGAGGGAATTCATCATCTTCATCATCTTCTTTAGTCCAAAAATACAGATTCAAGA GAGCAATTCTTGTTGGAAAAAGAGGTGGGTCTACTACTCCTGTCCCAACCTGGATGACAAGCTCAAAATCTCCAACCTTGGCAATGCTGAATGCTGAGTC CACCAAGTGCACACCACCTCAAAATGGAAGCAAAGCAAAAGAAGTCTCAGTTTCTGCAAGAAAATTAGCTGCCACTTTGTGGGAAATCAATGGAATGCCT TCTCCAAGAGTTAAGAAGAATCTGGAAGACAAGAAAGAGTTTAGAAGCAGAGAAAAAGTTGCTAGGTTGCCACATTTATCAGATCCATCTTATACTCCTT TTTCAGAGAGGATGGAGAAATCTAGAGGCCATAGTCATAGGGCAAGAACATCAGCTGTTACAAAAAGACTTCAGCTTACTGATTATCATCTTGGAGGTTT GGATTCTGCTAGCAGTGACAGTTTGATGGAGGCGATTGAAAGTCATCCAAAAGGCAAATCTCGCACAATTGGATTTAAAACCTGTTTGAAGGATGTTAGT GATGGGATAACCACCTCCAAAGAACTTTTGAAAGTTCTGAATCATGTTTGCGGCCTTGACGAGAAGCACCCATCAGGCTTATCTCTTGTCTCCGCCCTTC GGATTGAGCTTAATCGAGCCTGCATTTTGGTCAATCAATTGATCAAAGAACATCGATCAAACCACAATGAGATTGAGTACCGTATTAAGCATTTTGAGGA AGAGAAAGCAGCTTGGAAGAGCAAAGAGCGGGATAGGATTCGCAATGCAATAGCATGCATTGCAGAAGAGCTTGAAGTTGAGAGGAAACTACGAAGGCAA ACAGAGAGATTGAATAAGAAGCTTGGGAAAGAATTGGCAGATACAAAGGTATCTCTGTCAAAAGCAGTGAAAGAGCTTGAGAGTGAGAAGAGGGCGAAAG AAATATTGGAGCAAGTTTGTGATGAGTTGGCTAGAGGTATTGGAGAAGACAGAGCTGCGGTGGAAGAAATGAAAAAAGAATCTGCAAAGGTGAGGGAGGA GGTGGAGAAAGAAAGGGAAATGCTTCAGCTTGCTGATGTATTGCGTGAAGAAAGAGTCCAGATGAAGCTCTGTGAGGCTAAGTATCATTTTGAGGAGAAA AATGCAGCTGTGGAGAGGTTAAGAAATGAACTTGAGACCTACTTGAAAGAAAAGGCAGGTGCAGAAAACGGTGATGGTTCTCCAAATTATGAAAGGATTA AAGAGCTTGAGGCTTATTTAAAGGAAATCCAATTTGGATCATGTCAGCAGGATGAGAGGGAAGAGAATGAAGGGGGTGCAATAGGAAACGGAGAAGTTCA TGATGGAGATGATTCAGCTGACAGTGATCTTCATTCCATTGAATTAAACATGGACAATAACAGCAGGAGCTACAAATGGTGTTATGTTTCTGAAGGTGAT GCTCCAGACAATCCAAAGTGGTTTTCAGGAGGTAAAGATTTCAAGGGAAGGAAGTCGATCTCCGATAATATTCAATGGGGAAACATCTGTTTGCAAACAA GAAATTCCAATGGTATTGATGGTCCTGATTGTGACTTAATCAATGAAAATCAGGGAAGTCTGAATACGCTCTATAGGGAAAGGTTATCTGATCTTAGCTT CCATTATCCAGTACAAGATCATGAAGATGAAATCAAGAAATATAAAATATGTCAAGACTCTTAA
AA sequence Show only first row Show all	>Potri.009G160900.1 pacid=42771208 polypeptide=Potri.009G160900.1.p locus=Potri.009G160900 ID=Potri.009G160900.1.v4.1 annot-version=v4.1 MEAKSREQQHCKVRKRGNSSSSSSSLVQKYRFKRAILVGKRGGSTTPVPTWMTSSKSPTLAMLNAESTKCTPPQNGSKAKEVSVSARKLAATLWEINGMP SPRVKKNLEDKKEFRSREKVARLPHLSDPSYTPFSERMEKSRGHSHRARTSAVTKRLQLTDYHLGGLDSASSDSLMEAIESHPKGKSRTIGFKTCLKDVS DGITTSKELLKVLNHVCGLDEKHPSGLSLVSALRIELNRACILVNQLIKEHRSNHNEIEYRIKHFEEEKAAWKSKERDRIRNAIACIAEELEVERKLRRQ TERLNKKLGKELADTKVSLSKAVKELESEKRAKEILEQVCDELARGIGEDRAAVEEMKKESAKVREEVEKEREMLQLADVLREERVQMKLCEAKYHFEEK NAAVERLRNELETYLKEKAGAENGDGSPNYERIKELEAYLKEIQFGSCQQDEREENEGGAIGNGEVHDGDDSADSDLHSIELNMDNNSRSYKWCYVSEGD APDNPKWFSGGKDFKGRKSISDNIQWGNICLQTRNSNGIDGPDCDLINENQGSLNTLYRERLSDLSFHYPVQDHEDEIKKYKICQDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11590			unknown protein		Potri.009G160900 [exp]	0	1
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.017G016900 [exp]	2.44	0.8003
AT2G27830			unknown protein		Potri.004G188600 [exp]	2.82	0.7457
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.002G037500 [exp]	9.89	0.7098
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	13.19	0.7827
AT5G19485			transferases;nucleotidyltransf...		Potri.001G271800 [exp]	14.69	0.6863
AT2G26850			F-box family protein (.1)		Potri.006G040000 [exp]	23.23	0.6976
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.005G206100 [exp]	24.12	0.7480
AT5G63530		ATFP3	ARABIDOPSIS THALIANA FARNESYLA...		Potri.012G101400 [exp]	28.56	0.6997
AT4G32295			unknown protein		Potri.018G027100 [exp]	33.49	0.6755
AT1G30760			FAD-binding Berberine family p...		Potri.006G128900 [exp]	36.37	0.6843

Compare expression of checked genes

Potri.009G160900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.