Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27300 274 / 3e-88 NAC NTL8, ANAC040 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) AT5G22290 261 / 2e-83 NAC FSQ6, FAN, ANAC089 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) AT3G44290 256 / 3e-81 NAC ANAC060 NAC domain containing protein 60 (.1) AT1G65910 187 / 3e-52 NAC ANAC028 NAC domain containing protein 28 (.1) AT4G35580 180 / 1e-50 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT5G17260 179 / 2e-50 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 177 / 8e-50 NAC ANAC045 NAC domain containing protein 45 (.1) AT1G33060 180 / 1e-49 NAC ANAC014 NAC 014 (.1.2) AT3G49530 176 / 3e-49 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT3G10500 177 / 5e-49 NAC ANAC053 NAC domain containing protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G007500 [exp] 180 / 5e-50 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.015G004100 [exp] 178 / 2e-49 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.017G139500 [exp] 179 / 3e-49 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.010G229900 [exp] 176 / 1e-48 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.005G058900 [exp] 171 / 5e-48 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.008G031800 [exp] 174 / 6e-48 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.007G109100 [exp] 171 / 6e-48 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.003G089800 [exp] 169 / 6e-48 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.011G149300 [exp] 176 / 7e-48 AT1G33060 387 / 2e-125 NAC 014 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005204 [exp] 300 / 3e-97 AT5G22290 292 / 8e-97 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10013316 [exp] 296 / 4e-96 AT5G22290 285 / 5e-94 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10043402 [exp] 293 / 7e-96 AT5G22290 262 / 4e-86 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10034183 [exp] 293 / 2e-94 AT5G22290 263 / 5e-85 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10007377 [exp] 178 / 8e-49 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10015587 [exp] 175 / 2e-48 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10032919 [exp] 175 / 2e-48 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10042284 [exp] 169 / 3e-48 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10020794 [exp] 178 / 4e-48 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10026373 [exp] 168 / 5e-48 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.009G161300.1 pacid=42772714 polypeptide=Potri.009G161300.1.p locus=Potri.009G161300 ID=Potri.009G161300.1.v4.1 annot-version=v4.1 ATGGCTTCAGGGGAGGTGTCTCGAGAGACGCAGATGTCCATTGAAGCTACGTCTATGTTTCCTGGCTTTAGGTTTTCACCAACAGATGTAGAGTTGATTT CTTATTATCTGAAAAGGAAGATTGAGGGAGCTGAGAAATGTGTTGAAGTTATTTCTGAGATTGAAATTTGTAAACACGAGCCTTGGGATTTGCCAGCGAA ATCTGTCATCCAATCGGAGAATGAGTGGTTCTTCTTTTCGGCTCGTGGAAGAAAATACCCGAATGGGTCACAAAGTAAGAGGGCAACTGAACTTGGTTAC TGGAAAGCAACTGGCAAGGAACGTAACGTGAACTCAGGTTCTGATGTGATTGGTACCAAGAGAACTCTTGTGTTCCACGTAGGTCGTGCGCCGAAAGGGG AAAGAACAGAGTGGATTATGCATGAATATTGTATGAAAGGACAATCCCAGGATTCTTTAGTCGTTTGCCGCCTGCGGAAGAATGCCGAGTTCCGTCTCAG TGATACTTCAAACCAGGGTGATGTAAATGAAAGGCATTTGTCAACCACGCATAATAGTAGTAATGCCGTTTCTGATGGTGGTATTGATCAGGGGGGGGTA CCTGCAAGTGAGAAGGCTGCTGAATGCTCCAAGAGCTGTGAATCTTACTCTATTGAGCAACTTTCTTCAGCGTCCGAATCTGAACTGAAATTATCAAATG ATGTTGCCTTGGCAGAGTCTTCCAGCCACCAGAAGGATTCTGACAACGATGAGGATTTTTATGCTGATATACTGAAGGATGATATTATTAAACTCGATGA AACTCCATTTTTCGCCCCTCCTGGGCTTCGTTCACTGGTTGCGAGCAACTCTGGGGCTGGAACAAGACCTGAACAACCAGTCGAAATATTTATGTCGGAG GCACTTCCTTTACGCCCAGTTCCCTCGCAAGGAACAGAAAATCAGCCAGTCGAGATATTTATGTCGGAGGCACTTCGTTTATCCTCAATTTCTTCGCAAG GAACTGAAAATCAGCCAGTCGAGATTTTTATGTCGGAGGCACTTCCTTTATCCCCAATTTCTTGGCAAGGAACTGAAAATCAGCCAGTCGAGATGTTTAT GTCGGAGGCACTTCCTTTACACTCAATCCTAGGAACTGAAAATCAGCCAGTTGAGATGTTTATGTCGGAGGCACTTCCTTCACCCTCAATCCTAGGAACA GAAAATCAGCCAGCCGAGATATTTATGTCGGAGGCACTTCCTTCACCCTCAATTTCTTCGCAAGGAACAGCAAACCGAAGAATCAAGCTGAGGAGGCAAA TGCCTGGTATGTCTCAAGCAGAGATGCATGTTAATAATGTAGGTGAGGAAGGTAAGTTGCCATGCTCAAAGGAGCCTCCAAAATGTGTGCTTAGTTTACT CTCTGCAAAGACGGGCAAGCTTCGACATATTTCTACAGTTTTTATTATCCTGACTTTACTGGTTGTGTTTGTGTACTTGTTGGGAGGTTTCAAGTAA
AA sequence Show only first row Show all	>Potri.009G161300.1 pacid=42772714 polypeptide=Potri.009G161300.1.p locus=Potri.009G161300 ID=Potri.009G161300.1.v4.1 annot-version=v4.1 MASGEVSRETQMSIEATSMFPGFRFSPTDVELISYYLKRKIEGAEKCVEVISEIEICKHEPWDLPAKSVIQSENEWFFFSARGRKYPNGSQSKRATELGY WKATGKERNVNSGSDVIGTKRTLVFHVGRAPKGERTEWIMHEYCMKGQSQDSLVVCRLRKNAEFRLSDTSNQGDVNERHLSTTHNSSNAVSDGGIDQGGV PASEKAAECSKSCESYSIEQLSSASESELKLSNDVALAESSSHQKDSDNDEDFYADILKDDIIKLDETPFFAPPGLRSLVASNSGAGTRPEQPVEIFMSE ALPLRPVPSQGTENQPVEIFMSEALRLSSISSQGTENQPVEIFMSEALPLSPISWQGTENQPVEMFMSEALPLHSILGTENQPVEMFMSEALPSPSILGT ENQPAEIFMSEALPSPSISSQGTANRRIKLRRQMPGMSQAEMHVNNVGEEGKLPCSKEPPKCVLSLLSAKTGKLRHISTVFIILTLLVVFVYLLGGFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27300	NAC	NTL8, ANAC040	Arabidopsis NAC domain contain...		Potri.009G161300 [exp]	0	1
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013900 [exp]	1.00	0.9680
AT3G05620			Plant invertase/pectin methyle...		Potri.013G013200 [exp]	1.41	0.9680
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	5.29	0.9596
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	8.94	0.9433
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054700 [exp]	9.00	0.9656
AT3G20600		NDR1	non race-specific disease resi...		Potri.004G023400 [exp]	12.24	0.9448
AT4G31980			unknown protein		Potri.013G146600 [exp]	14.83	0.9259
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.012G038100 [exp]	15.96	0.9462	NAC020
					Potri.002G015500 [exp]	18.97	0.8901
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034300 [exp]	19.07	0.9444

Compare expression of checked genes

Potri.009G161300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.