Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04820 110 / 1e-29 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT2G36050 69 / 5e-14 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT3G52540 69 / 1e-13 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT1G05420 58 / 3e-10 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT1G79960 59 / 4e-10 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT2G18500 54 / 2e-08 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G19650 53 / 2e-08 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT5G58360 52 / 5e-08 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT5G22240 52 / 5e-08 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1) AT2G30400 52 / 9e-08 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241500 [exp] 136 / 5e-40 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.008G017500 [exp] 135 / 1e-39 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.016G072900 [exp] 115 / 2e-31 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 113 / 2e-30 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.008G153500 [exp] 67 / 2e-13 AT4G14860 103 / 1e-27 ovate family protein 11 (.1) Potri.010G087200 [exp] 62 / 2e-11 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.005G211300 [exp] 61 / 5e-11 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.001G180400 [exp] 61 / 7e-11 AT1G79960 137 / 2e-38 ovate family protein 14 (.1) Potri.002G051200 [exp] 60 / 1e-10 AT4G14860 62 / 1e-11 ovate family protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043406 [exp] 105 / 2e-28 AT5G04820 64 / 1e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10016979 [exp] 93 / 8e-23 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10021303 [exp] 94 / 2e-22 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10043433 [exp] 88 / 1e-20 AT5G04820 146 / 2e-42 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10034150 [exp] 86 / 4e-20 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10010554 [exp] 59 / 1e-10 AT1G05420 104 / 2e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006912 [exp] 59 / 2e-10 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10014677 [exp] 57 / 6e-10 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006120 [exp] 58 / 7e-10 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10035891 [exp] 54 / 1e-08 AT1G79960 166 / 2e-48 ovate family protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [poplar] [flax] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Potri.009G161600.1 pacid=42771637 polypeptide=Potri.009G161600.1.p locus=Potri.009G161600 ID=Potri.009G161600.1.v4.1 annot-version=v4.1 ATGAAACTCCCTTCAATCTTTAAGAAACAAGAAACCAATTTTGTTTCATGGAAATGGCCACCGTTCAGTATTGGGACATTTCCATTCCAATCTAAGGTGA ATGCTTTAAAAAATTTCTACTTTGCTTTACGTGATGCAGCCAAGTTCATGACAATGCTGAATTCCTCATGGTCACAATCAAAGACTATCTCCTTGACGCC CAAGGAATCTAAAGAGGACTCGCTGGAGATTGCTGTTAATAAGGCAGTGAGATCAGAGAGGTTGTTCTTCGAGCCAGGTAACACGAGTTCAATACTAGAT GATCATAACGATGAAGCTAGCAAATTCCCATTCCCTGAATGTGTAGCACTAGCTATGGAATCTGAAGATCCTTATGAGGATTTTCGCAGTTCAATGGAGG AAACTGTTGAGACTTGCGGATTAAAGAATTGGGAGGATGTAGAGGAGTTATTGGCATGGTATTTGAGAATGAATAGGCAGCAGCATCATTGCTTTATAAT TGAGGCCTTCGTTGATCTATTTTCTGCTGCCCCACCGTCTTTTTTTTCTTGCCCTGTTTCTCACAGTGACTCTGCTTCATCTTCAAAATCAAAAGATTTG TGGATGATTGAAGCTAAGAGGTCACAGCCAGCTATGGAAAAGGGGAAAAGTCTAAAGAATTGCTGA
AA sequence Show only first row Show all	>Potri.009G161600.1 pacid=42771637 polypeptide=Potri.009G161600.1.p locus=Potri.009G161600 ID=Potri.009G161600.1.v4.1 annot-version=v4.1 MKLPSIFKKQETNFVSWKWPPFSIGTFPFQSKVNALKNFYFALRDAAKFMTMLNSSWSQSKTISLTPKESKEDSLEIAVNKAVRSERLFFEPGNTSSILD DHNDEASKFPFPECVALAMESEDPYEDFRSSMEETVETCGLKNWEDVEELLAWYLRMNRQQHHCFIIEAFVDLFSAAPPSFFSCPVSHSDSASSSKSKDL WMIEAKRSQPAMEKGKSLKNC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.009G161600 [exp]	0	1
AT5G66720			Protein phosphatase 2C family ...		Potri.001G381000 [exp]	1.00	0.9635
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.015G093800 [exp]	2.82	0.9196
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.004G200400 [exp]	3.16	0.9341
AT5G62865			unknown protein		Potri.018G114200 [exp]	4.00	0.8951
AT4G34320			Protein of unknown function (D...		Potri.009G112430 [exp]	4.24	0.9067
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138800 [exp]	4.24	0.9200	DREB47
					Potri.018G072101 [exp]	4.47	0.9192
AT1G32928			unknown protein		Potri.001G450000 [exp]	6.00	0.9145
AT2G41410			Calcium-binding EF-hand family...		Potri.006G043700 [exp]	6.48	0.8701
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.007G138100 [exp]	6.63	0.9004

Compare expression of checked genes

Potri.009G161600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.