Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) AT2G42980 160 / 1e-43 Eukaryotic aspartyl protease family protein (.1) AT5G45120 159 / 3e-43 Eukaryotic aspartyl protease family protein (.1) AT2G03200 145 / 1e-38 Eukaryotic aspartyl protease family protein (.1) AT3G59080 142 / 8e-37 Eukaryotic aspartyl protease family protein (.1.2) AT1G25510 139 / 5e-36 Eukaryotic aspartyl protease family protein (.1) AT4G16563 139 / 7e-36 Eukaryotic aspartyl protease family protein (.1) AT1G01300 136 / 4e-35 Eukaryotic aspartyl protease family protein (.1) AT3G18490 127 / 6e-32 Eukaryotic aspartyl protease family protein (.1) AT3G61820 124 / 1e-30 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204700 [exp] 432 / 1e-148 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 414 / 1e-141 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 170 / 4e-47 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 168 / 1e-46 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 154 / 6e-41 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.012G118000 [exp] 150 / 4e-40 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 145 / 1e-38 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 141 / 4e-37 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 140 / 2e-36 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004204 [exp] 379 / 8e-128 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 374 / 7e-126 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 285 / 2e-92 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 271 / 3e-86 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10005211 [exp] 212 / 1e-66 AT3G52500 179 / 2e-54 Eukaryotic aspartyl protease family protein (.1) Lus10013324 [exp] 209 / 2e-65 AT3G52500 177 / 2e-53 Eukaryotic aspartyl protease family protein (.1) Lus10013325 [exp] 177 / 3e-52 AT3G52500 159 / 2e-45 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 181 / 2e-51 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 176 / 3e-49 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 165 / 2e-45 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.009G162400.1 pacid=42770804 polypeptide=Potri.009G162400.1.p locus=Potri.009G162400 ID=Potri.009G162400.1.v4.1 annot-version=v4.1 ATGGTTTCTGTTTCTTCTTCTTTGCTCTACTGTCTGTCTCTCCTTTCCTTATTTCCCTTCATTTCTTCTTCCATAACAATCCCATTACAACATCCCCAAA CAAACCAAATCCCGTTTCAAGATCAATACCAAAAGCTGAACCACCTTGTCACCACCTCCCTAGCAAGAGCCCGCCACCTCAAAAATCCCCAAACTACCCC TGCAACCACCACCACAGCCCCTCTCTTCTCTCATAGCTATGGAGGCTACTCAGTTTCTCTCAGCTTTGGCACTCCACCCCAAACCCTCTCTTTCATCATG GATACTGGAAGTGACATTGTCTGGTTCCCTTGCACCTCTCACTACCTTTGTAAGCACTGTTCTTTCTCCTCCTCCTCACCATCATCAAGAATCCAACCTT TTATCCCTAAAGAATCCTCATCTTCCAAGCTTCTTGGATGCAAAAACCCTAAATGCTCTTGGATCCACCACTCAAACATAAACTGCGATCAAGACTGTAG TATTAAATCCTGCCTCAACCAAACTTGTCCACCTTATATGATCTTCTACGGATCAGGCACAACTGGAGGCGTTGCATTATCAGAAACTCTCCATCTCCAT AGCCTATCAAAACCCAACTTCCTTGTCGGGTGCTCCGTATTCTCTTCCCACCAACCCGCGGGAATTGCTGGATTTGGTCGTGGACTTTCATCTTTACCAA GTCAACTTGGTCTAGGTAAGTTCTCTTACTGTTTACTCTCTCATAGATTCGATGATGACACCAAGAAGAGCAGCTCTTTAGTTCTCGACATGGAACAGTT AGATTCTGATAAAAAAACCAATGCCTTAGTGTACACTCCATTTGTGAAAAACCCTAAAGTTGACAACAAAAGTAGTTTCTCAGTTTATTACTATTTGGGT CTCCGGCGAATCACCGTCGGCGGCCACCATGTGAAGGTGCCTTACAAGTACTTGTCACCGGGAGAGGATGGCAATGGTGGGGTCATCATCGACTCAGGGA CCACGTTCACGTTCATGGCACGTGAGGCTTTTGAGCCACTGAGTGATGAGTTTATTAGACAAATTAAGGATTACAGGAGGGTTAAGGAAATTGAGGATGC GATTGGGCTAAGGCCTTGCTTTAATGTTTCTGATGCCAAAACGGTGTCGTTTCCTGAACTGAGGCTGTATTTTAAGGGTGGTGCTGACGTGGCACTGCCG GTGGAGAATTATTTCGCATTTGTCGGTGGTGAGGTGGCGTGCTTGACTGTGGTGACGGATGGGGTGGCGGGGCCGGAGAGGGTGGGCGGGCCTGGGATGA TTTTGGGGAATTTTCAGATGCAGAATTTTTACGTGGAGTATGATTTGAGGAATGAGAGATTAGGGTTCAAGCAAGAGAAATGCAAGTGA
AA sequence Show only first row Show all	>Potri.009G162400.1 pacid=42770804 polypeptide=Potri.009G162400.1.p locus=Potri.009G162400 ID=Potri.009G162400.1.v4.1 annot-version=v4.1 MVSVSSSLLYCLSLLSLFPFISSSITIPLQHPQTNQIPFQDQYQKLNHLVTTSLARARHLKNPQTTPATTTTAPLFSHSYGGYSVSLSFGTPPQTLSFIM DTGSDIVWFPCTSHYLCKHCSFSSSSPSSRIQPFIPKESSSSKLLGCKNPKCSWIHHSNINCDQDCSIKSCLNQTCPPYMIFYGSGTTGGVALSETLHLH SLSKPNFLVGCSVFSSHQPAGIAGFGRGLSSLPSQLGLGKFSYCLLSHRFDDDTKKSSSLVLDMEQLDSDKKTNALVYTPFVKNPKVDNKSSFSVYYYLG LRRITVGGHHVKVPYKYLSPGEDGNGGVIIDSGTTFTFMAREAFEPLSDEFIRQIKDYRRVKEIEDAIGLRPCFNVSDAKTVSFPELRLYFKGGADVALP VENYFAFVGGEVACLTVVTDGVAGPERVGGPGMILGNFQMQNFYVEYDLRNERLGFKQEKCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52500			Eukaryotic aspartyl protease f...		Potri.009G162400 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.019G024400 [exp]	4.47	0.9849
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093900 [exp]	4.58	0.9864
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126700 [exp]	4.79	0.9865
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G151200 [exp]	4.89	0.9860	SP1.2
AT5G44680			DNA glycosylase superfamily pr...		Potri.001G074700 [exp]	5.19	0.9811
AT1G60060			Serine/threonine-protein kinas...		Potri.014G024000 [exp]	12.44	0.9400
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.016G051100 [exp]	14.49	0.9694
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.017G086300 [exp]	15.49	0.9832
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.003G094400 [exp]	15.65	0.9653
					Potri.006G028601 [exp]	20.49	0.9826

Compare expression of checked genes

Potri.009G162400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.