Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27285 216 / 4e-68 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT2G27280 192 / 8e-58 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT1G55928 164 / 2e-48 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201300 [exp] 291 / 1e-98 AT2G27285 105 / 2e-26 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038787 [exp] 270 / 2e-89 AT2G27285 225 / 6e-72 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10039072 [exp] 255 / 2e-83 AT2G27285 224 / 3e-71 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10020557 [exp] 232 / 1e-74 AT2G27285 240 / 5e-78 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10009414 [exp] 111 / 7e-29 AT2G27285 110 / 7e-29 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09745 [poplar] [flax] DUF2040 Coiled-coil domain-containing protein 55 (DUF2040)
Representative CDS sequence Show only first row Show all	>Potri.009G162500.3 pacid=42770849 polypeptide=Potri.009G162500.3.p locus=Potri.009G162500 ID=Potri.009G162500.3.v4.1 annot-version=v4.1 ATGAAAAAGTATGGATTGCTGCTAAGACAACCACAGCAGAAAAAGCCACCACGGCCTCCACCTCCTACGGCGCTAGGATTCGGCGACGACGACGAAGACG ACGTGGAGAAGGAGATTTCACGGCAGGCTGCTAAGAACAAATCTCTTAAAGATATTGAGGAGCAGCATAAGAAAGCATTAGAAGAAGACCCATCAGTGTT TGATTATGATGGAGTTTATGACGAGATGAAGCAGAAAATTGCTCAGCCGAAAGCCCTAGATCGCCAAAAGAGAGAGTCTAAATATATCAAGACTTTGATG GGGAAGGCAGAAGAACGAAAACGACAACATGATGTAATATTTGAGAAAAATCTTGCGAAAGAAAGAAGTAAAGAAGATCACTTATTTGCAGACAAGGATA AGTTTGTGACAGCTGCTTATAAGAGGAAACTTGCAGAGCAGGAGAAATGGATGGAGGAAGAGCGTTTGCGTGAACTTAGAGAGGAGAAAGAGGATGTTAC CAAGAAGAGTGACTTGAGTGACTTCTATTTCAACCTCGGTAAAAATGTTGCACTTGGTGCGAAAGATTTACTGTCCAAGAAGCAAGAGAAACAAGATAAG CAAACTGAATTTAGGAAGCCAGAGAAGCCTTATGATAAAGTAGCTGGTGAAACGTCTGACGGAAATCATGCACTGACAGACTCAAAGTTTGAATTGGATT CTTCCAGTGTGAAAGAGGCACATCAAAAGGAAACTTCCCCTCCAAGAAGAAGTTCTGAACCATTAGATCCTGAGCCAGTTTCTGATAAACCAATTTCAGG CACTTCAACAGAAGTAAAAAATCCAGCTGAACAATCATCAGCCAATCAACCAAATCCTGATCATCATAAAAGAAATCAAGATGCACTGGCTGCAGCCAAA GAACGGTTTTTGGCACGGAAGAAGGCAAAGCAGCAGAAAGTCTCTGTTTCTTTCTTGGATTGCATGTTTTCCCGAGGGTAA
AA sequence Show only first row Show all	>Potri.009G162500.3 pacid=42770849 polypeptide=Potri.009G162500.3.p locus=Potri.009G162500 ID=Potri.009G162500.3.v4.1 annot-version=v4.1 MKKYGLLLRQPQQKKPPRPPPPTALGFGDDDEDDVEKEISRQAAKNKSLKDIEEQHKKALEEDPSVFDYDGVYDEMKQKIAQPKALDRQKRESKYIKTLM GKAEERKRQHDVIFEKNLAKERSKEDHLFADKDKFVTAAYKRKLAEQEKWMEEERLRELREEKEDVTKKSDLSDFYFNLGKNVALGAKDLLSKKQEKQDK QTEFRKPEKPYDKVAGETSDGNHALTDSKFELDSSSVKEAHQKETSPPRRSSEPLDPEPVSDKPISGTSTEVKNPAEQSSANQPNPDHHKRNQDALAAAK ERFLARKKAKQQKVSVSFLDCMFSRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27285			Coiled-coil domain-containing ...		Potri.009G162500 [exp]	0	1
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.009G079700 [exp]	4.24	0.8087
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Potri.003G055800 [exp]	13.30	0.8174	Pt-HSP91.3
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.015G038100 [exp]	13.63	0.8111
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.005G226900 [exp]	23.32	0.6467
AT2G37520			Acyl-CoA N-acyltransferase wit...		Potri.006G083600 [exp]	28.35	0.7360
AT5G65490			unknown protein		Potri.006G134400 [exp]	31.04	0.8074
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.010G053400 [exp]	34.98	0.7886
AT5G12410			THUMP domain-containing protei...		Potri.009G049700 [exp]	35.00	0.7579
AT1G45976		SBP1	S-ribonuclease binding protein...		Potri.014G027000 [exp]	36.00	0.7914	SBP1.3
AT5G26731			unknown protein		Potri.005G000401 [exp]	37.88	0.7892

Compare expression of checked genes

Potri.009G162500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.