Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) AT1G54740 57 / 3e-09 Protein of unknown function (DUF3049) (.1) AT1G22110 47 / 5e-06 structural constituent of ribosome (.1) AT5G22090 45 / 3e-05 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT4G02810 42 / 0.0003 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT1G77932 40 / 0.0003 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201500 [exp] 361 / 2e-126 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1) Potri.013G027100 [exp] 77 / 4e-16 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.005G037600 [exp] 67 / 7e-13 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.001G216000 [exp] 60 / 5e-10 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.005G209100 [exp] 58 / 2e-09 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 56 / 6e-09 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.008G149600 [exp] 54 / 3e-08 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.002G092000 [exp] 50 / 4e-07 AT1G22110 130 / 2e-36 structural constituent of ribosome (.1) Potri.002G053400 [exp] 50 / 5e-07 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004863 [exp] 202 / 2e-64 AT5G22390 97 / 9e-25 Protein of unknown function (DUF3049) (.1) Lus10020626 [exp] 199 / 2e-63 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1) Lus10035353 [exp] 69 / 3e-13 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 54 / 4e-08 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10029969 [exp] 50 / 2e-07 AT1G54740 74 / 4e-16 Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 52 / 3e-07 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 50 / 7e-07 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10010520 [exp] 41 / 0.0005 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [poplar] [flax] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Potri.009G162800.1 pacid=42770976 polypeptide=Potri.009G162800.1.p locus=Potri.009G162800 ID=Potri.009G162800.1.v4.1 annot-version=v4.1 ATGGCTGCCTGTGGAAGGCTCCAACATATATTTGAAAAACCATTGCCAGAAAACCCTACACTGCTTGAATCCCTCTCATCATGGAACCAAATCAAGCCTG TAAAACCAATGGAGCCATCCTCCTTAACTGAGATATTCGGTGAGCTTCATTTCAAGGAGGATCCTCAAACACCTTCTTCTTCTTTATTGGCAACTTCATC GTTCCTAGATTTGAACTCGGAAGCCAGAACAACAAGACTCGACAAGAATGATAGCGTGGAGGTCAAGAAGAGCCCATCAATATTGGACTCTGTCTCGAGC ACCGCCCTGAAGAATCATCAGTACACAGGTTGTCATAAGAATGGTGATAACTTTTCTCGAATGAATTATGAGAGCTTGCAACTATGTACCGAAGGGCTTG GTTTTGAAAGTTCTGATGATGTTGAAGACTTTAAGAATGATATAAATGATGACTGGCGATACCAGGAGAAAGTAAGAATCACAAGGCGTTCTGTATCAGA GGATCTCAGCAGGCCAAGATCAGGTGGAAGGGCATTCCCCCCGCCAATTTCATGTATCGGAAGGAGTGGAAAGCCTCAGGTTATCTTTAAGTCTTATAGG CATGATGGTAGGTTTGTCCTTAAAGAAGTGAGGATGCCTACCTTGGAGTTTCTGCGTGCATGTAGAGAGGATGGGAGGTTGACCCTGCAGTTTGTTCATC CCAATGATGAAATCACTGATGAAGGAGATGAGGAAGAAGTTGAAGAAGACTATGAAGATGATTCGCAGGAAGAATCTGATGAGGAAAAAGGCAACGATGA TGACGATGGATGA
AA sequence Show only first row Show all	>Potri.009G162800.1 pacid=42770976 polypeptide=Potri.009G162800.1.p locus=Potri.009G162800 ID=Potri.009G162800.1.v4.1 annot-version=v4.1 MAACGRLQHIFEKPLPENPTLLESLSSWNQIKPVKPMEPSSLTEIFGELHFKEDPQTPSSSLLATSSFLDLNSEARTTRLDKNDSVEVKKSPSILDSVSS TALKNHQYTGCHKNGDNFSRMNYESLQLCTEGLGFESSDDVEDFKNDINDDWRYQEKVRITRRSVSEDLSRPRSGGRAFPPPISCIGRSGKPQVIFKSYR HDGRFVLKEVRMPTLEFLRACREDGRLTLQFVHPNDEITDEGDEEEVEEDYEDDSQEESDEEKGNDDDDG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22390			Protein of unknown function (D...		Potri.009G162800 [exp]	0	1
					Potri.005G099266 [exp]	1.00	0.8935
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.019G131600 [exp]	5.65	0.8918	RPT2.3
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	7.74	0.8829
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.011G021400 [exp]	9.48	0.8930
AT3G07120			RING/U-box superfamily protein...		Potri.002G243800 [exp]	14.83	0.8165
					Potri.016G115650 [exp]	15.96	0.8210
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.010G076700 [exp]	22.95	0.8393
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.008G135600 [exp]	27.16	0.8707
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011302 [exp]	27.34	0.8686
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152080 [exp]	29.25	0.8723

Compare expression of checked genes

Potri.009G162800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.