Plant FIBer expression Database

Potri.009G163001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G163001.1 pacid=42772518 polypeptide=Potri.009G163001.1.p locus=Potri.009G163001 ID=Potri.009G163001.1.v4.1 annot-version=v4.1
ATGTATAATGGAGGTGGTGAGATTTCTGCCAAAGATATGGCTCCTCGTCTAACGTTCAAAAACCATCCCGACTTTAAACCTCGAGGTTTTTCCTTGGAAT
TTCTGACATGTGAAGTACACCCACAAAATCAATCCATCAAAGTGTTAGCCGCAAGCAATGGGCTGATGTTAATGTCATGCCCTCGTATTGTTAGACTGTA
TATGTTATACTTGCTAGCAATAGTCTACAATGAGATTATGCATTGGCTTGCCTGTCACTTTACAATCATAGCTTACGATCCAAATGTGAATTCTGGTCAA
TGCCGCTCGATAAACTTGCCGAAAGACTGGCAGTGTCCCCATCTCGGAGTTCTTGGTTTGTGCCGCGAAACGCCTTTGTTATCTCCACGTGGATGCAGGT
AG
AA sequence
>Potri.009G163001.1 pacid=42772518 polypeptide=Potri.009G163001.1.p locus=Potri.009G163001 ID=Potri.009G163001.1.v4.1 annot-version=v4.1
MYNGGGEISAKDMAPRLTFKNHPDFKPRGFSLEFLTCEVHPQNQSIKVLAASNGLMLMSCPRIVRLYMLYLLAIVYNEIMHWLACHFTIIAYDPNVNSGQ
CRSINLPKDWQCPHLGVLGLCRETPLLSPRGCR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G163001
[exp]
0 1
AT1G22275 ZYP1b Myosin heavy chain-related pro... Potri.002G096400
[exp]
1.73 0.8295
AT5G63520 unknown protein Potri.015G098800
[exp]
2.00 0.8175
AT5G08560 transducin family protein / WD... Potri.008G002700
[exp]
3.87 0.8128
AT2G23140 RING/U-box superfamily protein... Potri.005G144700
[exp]
5.19 0.7819
AT5G46630 Clathrin adaptor complexes med... Potri.001G143800
[exp]
6.16 0.7359
AT3G63340 Protein phosphatase 2C family ... Potri.005G214650
[exp]
15.19 0.7587
AT2G46310 AP2_ERF CRF5 cytokinin response factor 5 (.... Potri.014G094500
[exp]
18.76 0.8076
AT1G06340 Plant Tudor-like protein (.1) Potri.009G151200
[exp]
27.71 0.6821
AT5G41370 XPB1, ATXPB1 ARABIDOPSIS HOMOLOG OF XERODER... Potri.001G101300
[exp]
39.45 0.6604 Pt-XPB1.2
AT4G30230 unknown protein Potri.018G092800
[exp]
42.74 0.7828

Potri.009G163001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.