Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52660 399 / 2e-135 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G00830 389 / 5e-131 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G28390 140 / 3e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G44710 121 / 6e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 86 / 1e-17 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G16380 77 / 8e-15 PAB6 poly(A) binding protein 6 (.1) AT1G71770 77 / 1e-14 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G36960 75 / 3e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G19610 73 / 2e-13 nucleotide binding;nucleic acid binding;RNA binding (.1) AT1G22760 69 / 2e-12 PAB3 poly(A) binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201900 [exp] 637 / 0 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G212400 [exp] 467 / 8e-162 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 457 / 6e-158 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 388 / 7e-131 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 376 / 3e-126 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.005G116400 [exp] 136 / 6e-34 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 133 / 4e-33 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 132 / 1e-32 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 132 / 2e-32 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034195 [exp] 468 / 1e-162 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043390 [exp] 465 / 1e-161 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021351 [exp] 430 / 3e-147 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002689 [exp] 363 / 5e-121 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10030207 [exp] 358 / 2e-119 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10017026 [exp] 293 / 1e-94 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028162 [exp] 129 / 1e-31 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 112 / 7e-26 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 107 / 1e-24 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002835 [exp] 82 / 4e-16 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.009G163400.8 pacid=42771376 polypeptide=Potri.009G163400.8.p locus=Potri.009G163400 ID=Potri.009G163400.8.v4.1 annot-version=v4.1 ATGCCAAGTACAAAGGGAAATGGATCAGCAGCTGCTGAGCAAGCAGAGTCTGAAAAGCCAGTTGAGTATGATGAGAAGGTTGATCTTGATGAAGACTATG ATCCTGAGGAAATGATGGATGAAGAGGTTGAGTATGAAGAAGTAGAGGAAATAGTGGAAGAGGAAGTGGAAGAAGAGGAAATAATAGAAGAGGAGGAAGA AGTAGAGGTGGAGGAAGAGGATGACGATGATGCTAGCAATGCTAATGCAGGTGACGAGACAAAGGTTGAAGATGAGGATGAGCAGAAAAAATACGACGAG CTGCTTGCCCGCCCTCCTCATGGTTCTGAAGTATATATTGGTGGCATTCCAAATGATGCTTCTGAGGAGGACTTGAGGGATTTTTGCGAGTCTGTTGGAG AAGTTACAGAGGTTCGAATTATGAGAGAAAAAGATTCAAGTGAGAACAGGGGCTTTGCATTTGTGACCTTTAGAAGTGTTGATTTGGCTTCTACGGCAAT TGGTGAGCTGAATAATACTGAATTCAAGGGTAAAAAAATCAAATGCTCGACATCTCAGGCGAAGCACCGGTTGTTCCTTAGCAACATTCCTAGAAGTTGG GGAGAGGATGGTCTGAGGAAGATTGTGGCTGAGGTTGGGCCTGGAGTTACCAACGTGCAATTGGTGAAGGAGAAGAGCTCAAGCAATAACAGGGGCTATG CTTTTATTGAGTACTACAATAATGCTTGTGCTGAGTATTCAAGGCAGAAGATGATGGATCCAAAATTTAAGCTGGGTGATAATGCCCCAGCTGTGAGCTG GGCTGACCCTAAAAATGCCGACTCTTCTGCTTCTTCACAGGTTAAGGCACTATATGTGAAAAATTTACCAAAGACGGTAACCCAAGATCAGTTGAAAAAG CTATTTGAACGACATGGAAAAATCACCAAAGTGGTTTTGCCACCAGCAAAATCTGGACAGGAGAAAAATAGAATTGGTTTTGTGCATTTTGCTGAGAGGT CTAGTGCCATGAAAGCATTGAAGGATACTGAAAAATATGAACTAGATGGCCAGCTTGTGGAGTGTGCTCTTGCAAAACCTCAGTCAGAGCAGAAGGCTGC TGGAGGCTCAAACTTGCAGAATACAGGTTTGTTACCAGGTTACCCACCTGGTGTTGGTTATGGTATGATGGGGAATGCCTATGGTGCTCTTGGAGCAGGA TATGTTACAGCAGGCTTTGCACAGCAGCCGTTGATCTATGGAAGTGGACCATCCCCTGCTGGCATGGCAATGATGCCAATGCTTCTACCTGATGGGCAGT TCGGATATGTGCTGCAACAGCCAGGAGTACAGCTACACTCACCAACTTCATATCAAAGAAATGATAGCAGGAGTGGAAGTGGTGGGCGAGGCAACAAAAT GGGTGGCAGTTCAAACAGGGGTAGACATAGCAATGACTCCGGCCATGGCCAGAGATTTCGTCCATACTAA
AA sequence Show only first row Show all	>Potri.009G163400.8 pacid=42771376 polypeptide=Potri.009G163400.8.p locus=Potri.009G163400 ID=Potri.009G163400.8.v4.1 annot-version=v4.1 MPSTKGNGSAAAEQAESEKPVEYDEKVDLDEDYDPEEMMDEEVEYEEVEEIVEEEVEEEEIIEEEEEVEVEEEDDDDASNANAGDETKVEDEDEQKKYDE LLARPPHGSEVYIGGIPNDASEEDLRDFCESVGEVTEVRIMREKDSSENRGFAFVTFRSVDLASTAIGELNNTEFKGKKIKCSTSQAKHRLFLSNIPRSW GEDGLRKIVAEVGPGVTNVQLVKEKSSSNNRGYAFIEYYNNACAEYSRQKMMDPKFKLGDNAPAVSWADPKNADSSASSQVKALYVKNLPKTVTQDQLKK LFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELDGQLVECALAKPQSEQKAAGGSNLQNTGLLPGYPPGVGYGMMGNAYGALGAG YVTAGFAQQPLIYGSGPSPAGMAMMPMLLPDGQFGYVLQQPGVQLHSPTSYQRNDSRSGSGGRGNKMGGSSNRGRHSNDSGHGQRFRPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.009G163400 [exp]	0	1
AT5G49880			mitotic checkpoint family prot...		Potri.003G000900 [exp]	1.41	0.7859
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.011G169300 [exp]	6.00	0.7502	WRKY2.1
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	9.00	0.7077
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	23.02	0.7215	ATHMG.2
AT5G25265			unknown protein		Potri.006G258800 [exp]	24.39	0.6958
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.005G226700 [exp]	31.55	0.7609
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	34.77	0.7031
AT4G22820			A20/AN1-like zinc finger famil...		Potri.012G130000 [exp]	43.12	0.7528
AT1G07990			SIT4 phosphatase-associated fa...		Potri.009G014700 [exp]	50.19	0.6954
AT1G28280			VQ motif-containing protein (....		Potri.001G399100 [exp]	61.01	0.7461

Compare expression of checked genes

Potri.009G163400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.