Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27480 230 / 4e-76 Calcium-binding EF-hand family protein (.1) AT5G04170 206 / 6e-65 Calcium-binding EF-hand family protein (.1) AT3G10300 204 / 1e-64 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT3G03400 39 / 0.0006 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202200 [exp] 331 / 1e-115 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.016G043600 [exp] 195 / 2e-61 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.006G047300 [exp] 193 / 6e-61 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.010G080900 [exp] 41 / 0.0002 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.004G204700 [exp] 40 / 0.0003 AT5G12180 61 / 2e-11 calcium-dependent protein kinase 17 (.1) Potri.017G126200 [exp] 40 / 0.0005 AT1G66400 155 / 5e-49 calmodulin like 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043389 [exp] 313 / 7e-109 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1) Lus10019545 [exp] 303 / 9e-105 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1) Lus10035435 [exp] 205 / 4e-65 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10042037 [exp] 201 / 4e-63 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10018041 [exp] 199 / 6e-62 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10031049 [exp] 187 / 5e-60 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10009127 [exp] 40 / 0.0008 AT1G66400 147 / 2e-44 calmodulin like 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand CL0220 [poplar] [flax] EF_hand PF13405 [poplar] [flax] EF-hand_6 EF-hand domain
Representative CDS sequence Show only first row Show all	>Potri.009G163600.6 pacid=42771894 polypeptide=Potri.009G163600.6.p locus=Potri.009G163600 ID=Potri.009G163600.6.v4.1 annot-version=v4.1 ATGTCTTTTTTCTCTAAAAAACCACGATCATCATCATCATCATCATCATCATCATCTTATGCACCCTCTGCTCCATCTCTACCTGAGTCATATGATCAAC GAGGTCAGGCATACAGCACTTCTCATCAAAGTAACCACAGCCAGCAGCAGCAGCAGTCTTATTATGGACAGGGCAATGGTGGTGGCTCTTCATATGGGCA CTCAGGTTTTCCACCAGGGACATCTCCAGATGTTATTAGGAGCTTTGAGATGGTTGATAGAGATAGGAGTGGATTTATTGACGAGAACGAGTTGCAACAA GCTGTTTCTTCTGGTTACCAAAGGTTTAGTATTAGGACTATTAGGTTGCTCATGTTTCTCTTCAAGAATCCTCATGATCCTCTACGATTTGGACCCAAAG AATTTGCTGCTTTATGGGGTTGTCTTGGTCAGTGGAGGGGCATATTTGAGAGATATGATAAAGACAGGAGTGGGAAAATTGATTTGTTTGAACTGAGGGA TGCTCTTTATAGCCTTGGGTTTGCTATTCCATCTTCGGTTCTTCAGGTTCTGATTTCCAAGTATGATGATGGAAGTGGCCGAAGGATTGAACTCAATTTT GACAGTTTTGTCGAATGCGGCATGATTTTGAAGGGATTGACTGAAAAATTTAAGGAGAAGGATAAGCGTCATACCGGCACAACAACATTTAATTATGATG AATTCATGTCCATGGTCATTCCATTTCTTGTATCGTATGACTGA
AA sequence Show only first row Show all	>Potri.009G163600.6 pacid=42771894 polypeptide=Potri.009G163600.6.p locus=Potri.009G163600 ID=Potri.009G163600.6.v4.1 annot-version=v4.1 MSFFSKKPRSSSSSSSSSSYAPSAPSLPESYDQRGQAYSTSHQSNHSQQQQQSYYGQGNGGGSSYGHSGFPPGTSPDVIRSFEMVDRDRSGFIDENELQQ AVSSGYQRFSIRTIRLLMFLFKNPHDPLRFGPKEFAALWGCLGQWRGIFERYDKDRSGKIDLFELRDALYSLGFAIPSSVLQVLISKYDDGSGRRIELNF DSFVECGMILKGLTEKFKEKDKRHTGTTTFNYDEFMSMVIPFLVSYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27480			Calcium-binding EF-hand family...		Potri.009G163600 [exp]	0	1
AT4G04720		CPK21	calcium-dependent protein kina...		Potri.011G003400 [exp]	2.44	0.8796
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	2.82	0.8587
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	3.00	0.8406
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136466 [exp]	6.00	0.8662
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	10.00	0.7996
AT5G36930			Disease resistance protein (TI...		Potri.019G007884 [exp]	10.24	0.8590
AT5G60800			Heavy metal transport/detoxifi...		Potri.009G007600 [exp]	13.74	0.8045
AT3G19970			alpha/beta-Hydrolases superfam...		Potri.007G075400 [exp]	13.85	0.8253
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136400 [exp]	15.68	0.8562
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.005G248500 [exp]	17.54	0.8261	Ptr4CL14

Compare expression of checked genes

Potri.009G163600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.