Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G32860 402 / 9e-139 Glycosyl hydrolase superfamily protein (.1) AT5G42100 397 / 9e-137 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G18340 367 / 2e-125 Glycosyl hydrolase superfamily protein (.1) AT1G30080 366 / 5e-125 Glycosyl hydrolase superfamily protein (.1) AT3G15800 350 / 1e-118 Glycosyl hydrolase superfamily protein (.1) AT2G26600 327 / 4e-110 Glycosyl hydrolase superfamily protein (.1.2) AT4G26830 307 / 2e-101 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 299 / 2e-98 Glycosyl hydrolase family 17 protein (.1) AT5G55180 299 / 4e-98 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202400 [exp] 608 / 0 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 520 / 0 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G152400 [exp] 442 / 1e-154 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 437 / 1e-152 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.011G084900 [exp] 378 / 1e-129 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 372 / 2e-127 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 352 / 6e-120 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 348 / 2e-117 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 338 / 2e-113 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020618 [exp] 508 / 0 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10004869 [exp] 503 / 5e-179 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10008277 [exp] 415 / 5e-144 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 409 / 1e-141 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 399 / 1e-138 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 395 / 2e-136 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 382 / 2e-131 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 369 / 9e-127 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 365 / 2e-124 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 360 / 2e-123 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.009G163700.4 pacid=42772090 polypeptide=Potri.009G163700.4.p locus=Potri.009G163700 ID=Potri.009G163700.4.v4.1 annot-version=v4.1 ATGGCCACTTACTCTGTCCATCTTCGTCTTCTTTTCTTGCTTCTCGCTCTTTCAGGTGTCCATGTCCTTGGTGCTGGGTTTGGAATTAACTATGGACAGA TTGCCGACAACCTCCCATCTCCCTCTCGTGTTTCCGTGATGCTTCAATCCCTCGACGTCAGCAGGTTAAAACTCTATGATACCGATCCGAAAGTCCTGCA GGCCTTTTCTAATTCAAGTGTTGAATTCATTGTTGGGATTGGGAACGAGTACCTCCAAGACATGGCTGATCCTGTCAAAGCTCAAAACTGGGTTCAACAG CATCTTCAACCCTACCTCGCTCAAACCAAAATCACTTGCATCTCTGTCGGGAACGAGGTGTTCATGAGCAATGATACTCAGATATGGTCAAATCTCCTTC CGGCAATGAAGATGGTGCATAACACTCTTGTTAATCTTGGATTAGATAAACAAGTGATTGTCACTACTGCACATCCCTTTACCATCATAGGAAATTCCTA CCCTCCTTCATCCGGGACTTTCCGGCAAGATATTATCGGATACATGCATGCGATCTTGGATTTTCATTCTCAAACCAAGTCACCATTCCTTATCAACGCA TATCCCTTTTTTGCATACAAGGATAGCCCAGGCCAAATATCTCTAGATTATGTCCTTTTCCAGCCTAACGAAGGGATGACAGATCCAAACACAAATCTGC ATTATGATAATATGTTGTACGCTCAAGTAGATGCTGTGTATTCAGCAATTAAAGCAATCGGACATACAGATGTTGAAGTTAAGATCTCAGAGACAGGTTG GCCATCCAAGGGGGATCCTACCGAGGTTGGATCAACACTACAAAACGCAGAGCTATATCATAGTAATCTGTTGAAGAGAATTCAGCAGAAGCAAGGCACA CCAGCAAAACCATCCGTGCCGATTGACGTATATGTTTTTGCACTCTTTAACGAGAATTTAAAGCCTGGTCCGACATCTGAAAGGAACTACGGGCTCTTTT ATCCCGACGGTACTCCAGTTTTTAACATCGGATTGCAGGGCAATCTTCCTGGAATAATGTATTCCTCGGCATCCAATATAAATGCATTGTCTACCTTCAG CTTGGTGATATCTGTTCTAGCATACTTGATCCATGCTTAG
AA sequence Show only first row Show all	>Potri.009G163700.4 pacid=42772090 polypeptide=Potri.009G163700.4.p locus=Potri.009G163700 ID=Potri.009G163700.4.v4.1 annot-version=v4.1 MATYSVHLRLLFLLLALSGVHVLGAGFGINYGQIADNLPSPSRVSVMLQSLDVSRLKLYDTDPKVLQAFSNSSVEFIVGIGNEYLQDMADPVKAQNWVQQ HLQPYLAQTKITCISVGNEVFMSNDTQIWSNLLPAMKMVHNTLVNLGLDKQVIVTTAHPFTIIGNSYPPSSGTFRQDIIGYMHAILDFHSQTKSPFLINA YPFFAYKDSPGQISLDYVLFQPNEGMTDPNTNLHYDNMLYAQVDAVYSAIKAIGHTDVEVKISETGWPSKGDPTEVGSTLQNAELYHSNLLKRIQQKQGT PAKPSVPIDVYVFALFNENLKPGPTSERNYGLFYPDGTPVFNIGLQGNLPGIMYSSASNINALSTFSLVISVLAYLIHA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27500			Glycosyl hydrolase superfamily...		Potri.009G163700 [exp]	0	1
					Potri.006G175050 [exp]	5.29	0.8553
AT1G43760			DNAse I-like superfamily prote...		Potri.006G175087 [exp]	8.36	0.8325
					Potri.008G062800 [exp]	9.79	0.8549
AT3G24255			RNA-directed DNA polymerase (r...		Potri.006G175124 [exp]	11.00	0.8834
AT5G60280			Concanavalin A-like lectin pro...		Potri.009G036500 [exp]	17.66	0.7922
AT2G16980			Major facilitator superfamily ...		Potri.010G237300 [exp]	25.92	0.7901
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	32.37	0.7637
					Potri.018G096150 [exp]	33.82	0.7607
AT1G05790			lipase class 3 family protein ...		Potri.002G231534 [exp]	35.69	0.8253
AT3G18860			transducin family protein / WD...		Potri.009G112184 [exp]	37.22	0.7677

Compare expression of checked genes

Potri.009G163700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.