Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01850 318 / 7e-109 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G14720 312 / 4e-106 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT1G32170 298 / 1e-100 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 274 / 7e-91 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT4G13090 230 / 1e-74 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT1G10550 224 / 5e-72 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT3G44990 223 / 1e-71 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT2G36870 208 / 6e-66 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT5G65730 207 / 8e-66 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT5G13870 201 / 2e-63 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102300 [exp] 321 / 7e-110 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 315 / 2e-107 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.001G136100 [exp] 307 / 6e-104 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 292 / 2e-98 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.014G115000 [exp] 235 / 2e-76 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.002G244200 [exp] 230 / 1e-74 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.009G006600 [exp] 211 / 4e-67 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.016G098600 [exp] 207 / 8e-66 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.006G122900 [exp] 204 / 2e-64 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029000 [exp] 323 / 2e-110 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10013240 [exp] 320 / 2e-109 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10030760 [exp] 320 / 3e-109 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10010427 [exp] 300 / 4e-101 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10012115 [exp] 253 / 6e-83 AT1G32170 401 / 9e-141 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10029165 [exp] 231 / 1e-74 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 230 / 2e-74 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10021422 [exp] 222 / 2e-71 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 220 / 1e-70 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 217 / 2e-69 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.009G163850.1 pacid=42771304 polypeptide=Potri.009G163850.1.p locus=Potri.009G163850 ID=Potri.009G163850.1.v4.1 annot-version=v4.1 ATGGCCTTCATCCCTTCTTGTGTTCTTGGGTTCTCATCACATGGTTTACCTACTTCATCGTTCAATGAATCATTCATTCGTTTATTTGGGAATGATCATG TGATTTTTCTTGACGATGAACGAAAATCAGTTCAAATTTCCCTTGATCAAAGTTCAGGTTCTGGTTTTGCGTCACAACTCACGTATCTCTATTCATATTT CAGTGCTTCCATCAAATTACCAGGAAATTACACCGCTGGAGTTGTTGTCTCTTATTACACATCAAATGCTGATGAGCACACAACTAATCACGATGAAATT GATTTTGAGTTCTTGGGAAATACTGGAGGCAAACCTTGGACCCTCCAAACCAATTTATATGGCAATGGAAGTACAGGTAGGGGACGTGAAGAGAGGTACA CTCTTTGGTTTGATCCTACTCAAGATTTCCATTCGTATAGTATTCTTTGGACCAGTACATGGATCGTTTACTACGTGGATGATGTTCCTGTTAGAGAGGT TCAAAAGATTGATGCCATGGGTGGAGATTTTCCCTCTAAGGCTATGAATTTATTTGCTACAGTATGGGATGGATCTAGCTGGGCAACAGGTGGAGGCCAA AACAAGGTTGATTATAAATATGCTCCTTTCATTGCTAAATATTCCAGTTTTGTGCTGTATGGATGCTCTGCCAACCCAGCCCGAGAAGAGTCAGCTGCTG AAACGTGTGGTAATGCCACAGATTTGAATTCTTTCAATGGTTTGACAGCTGAGAGAAAGGGGAAAATGGAGAAATTTAGGATTGAACATTTGATTTATTC TTATTGCAATGATCGTTCTCGATACCCAACTCCATTGCCTGAGTGTAATTTAAGAGGAAAATCTAGTTGA
AA sequence Show only first row Show all	>Potri.009G163850.1 pacid=42771304 polypeptide=Potri.009G163850.1.p locus=Potri.009G163850 ID=Potri.009G163850.1.v4.1 annot-version=v4.1 MAFIPSCVLGFSSHGLPTSSFNESFIRLFGNDHVIFLDDERKSVQISLDQSSGSGFASQLTYLYSYFSASIKLPGNYTAGVVVSYYTSNADEHTTNHDEI DFEFLGNTGGKPWTLQTNLYGNGSTGRGREERYTLWFDPTQDFHSYSILWTSTWIVYYVDDVPVREVQKIDAMGGDFPSKAMNLFATVWDGSSWATGGGQ NKVDYKYAPFIAKYSSFVLYGCSANPAREESAAETCGNATDLNSFNGLTAERKGKMEKFRIEHLIYSYCNDRSRYPTPLPECNLRGKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G163850 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G352100 [exp]	5.83	0.9056
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172100 [exp]	6.63	0.9542
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174202 [exp]	8.30	0.9518
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.005G140700 [exp]	11.66	0.8826	Pt-AP2.14
AT3G44610			Protein kinase superfamily pro...		Potri.009G146500 [exp]	13.22	0.9416
AT3G52740			unknown protein		Potri.004G203000 [exp]	14.49	0.9422
AT3G59800			unknown protein		Potri.007G139900 [exp]	17.72	0.7530
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	18.49	0.9320
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143700 [exp]	20.71	0.9209
					Potri.016G068650 [exp]	24.65	0.9056

Compare expression of checked genes

Potri.009G163850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.