Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52740 101 / 7e-29 unknown protein AT3G44450 75 / 1e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202900 [exp] 138 / 3e-43 AT3G52740 100 / 1e-27 unknown protein Potri.004G203000 [exp] 110 / 3e-32 AT3G52740 90 / 1e-23 unknown protein Potri.009G164000 [exp] 107 / 1e-30 AT3G52740 95 / 2e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004872 [exp] 98 / 2e-27 AT3G52740 102 / 6e-29 unknown protein Lus10020614 [exp] 82 / 3e-21 AT3G52740 103 / 2e-29 unknown protein Lus10014197 [exp] 81 / 2e-20 AT3G52740 87 / 2e-22 unknown protein Lus10021366 [exp] 81 / 3e-20 AT3G52740 91 / 1e-23 unknown protein Lus10017046 [exp] 81 / 4e-20 AT3G52740 94 / 6e-25 unknown protein Lus10022717 [exp] 74 / 6e-18 AT3G52740 76 / 3e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G163900.4 pacid=42772933 polypeptide=Potri.009G163900.4.p locus=Potri.009G163900 ID=Potri.009G163900.4.v4.1 annot-version=v4.1 ATGGAAGGAATCCATTTCTCATCCAAGAAAGAAGAAGATCCCACCATTAATATAGTTTCTCCACATCATGATGGAGATTGTGAGGCTGGTCATGAAGCGC TGTTGCATAAAGATAGTGGACGTGAAAGATTGAAGAAGCATAGAGAAGAGGTAGCTGGCAGGGTCATGATACCAGATACATGGGGTCAAGAGGATTCGCT CAAGGATTGGATCGATTGTTCCGCCTTTGATGAGTTGCTAGCCCCCAATGGAATTTCATCAGCTCGCGAATCCCTTGTTGCTGAGGGACGTAAAGGAAGC TCTCCAAGATTGGGGATAGCAAGTAGGTGTTGA
AA sequence Show only first row Show all	>Potri.009G163900.4 pacid=42772933 polypeptide=Potri.009G163900.4.p locus=Potri.009G163900 ID=Potri.009G163900.4.v4.1 annot-version=v4.1 MEGIHFSSKKEEDPTINIVSPHHDGDCEAGHEALLHKDSGRERLKKHREEVAGRVMIPDTWGQEDSLKDWIDCSAFDELLAPNGISSARESLVAEGRKGS SPRLGIASRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52740			unknown protein		Potri.009G163900 [exp]	0	1
AT5G65620			Zincin-like metalloproteases f...		Potri.009G151300 [exp]	1.00	0.9706
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.010G166200 [exp]	2.44	0.9589
AT5G62680			Major facilitator superfamily ...		Potri.012G071500 [exp]	2.64	0.9518
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.002G056800 [exp]	3.46	0.9660
					Potri.002G167500 [exp]	4.47	0.9552
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.012G040050 [exp]	5.00	0.9308
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	6.00	0.9566
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.005G062700 [exp]	6.92	0.9393
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G151725 [exp]	8.24	0.9390
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.015G022100 [exp]	10.95	0.9446

Compare expression of checked genes

Potri.009G163900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.