Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67190 613 / 0 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203300 [exp] 716 / 0 AT1G67190 654 / 0.0 F-box/RNI-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004875 [exp] 620 / 0 AT1G67190 619 / 0.0 F-box/RNI-like superfamily protein (.1.2) Lus10020611 [exp] 615 / 0 AT1G67190 616 / 0.0 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.009G164200.4 pacid=42771908 polypeptide=Potri.009G164200.4.p locus=Potri.009G164200 ID=Potri.009G164200.4.v4.1 annot-version=v4.1 ATGGAACATCTTCCAGTTGAAGTTATTGGGAACATTCTGTCACGGCTAGGAGGTGCTCGAGATGTGGTGATAGCTTCTGCAACATGTCGGAAGTGGCGAG AAGCTTGGCGCAAACATCTTCACACTCTTTCATTTAATTCCAATGATTGCAATGTCTATCAAGATCTCACAACTAGCCGACTACAGATACTGATAACTCA GACAATATTTCAAACCACTGGGTTACAAGGCTTGTCGATTTTGATGGATGATGTTGATGAGTTCTCTGCTTCAACAGTTATTGCTTGGCTTATGTACACC AGGGAAACCTTGCACCGATTGATTTATAATGTTCGGACTAATCCGAATGTTAATATTCTTGAGATTTGTGGCAGGCAGAAGATGGAAATGTTGGAACTGT CCCACAACTCGATAACAGGGGTTGAACCCAACTTTCAGAGATTCCCTTGTTTAAAATCCCTTTCTTTGAGTTATGTCAGTATCTCAGCATTGGATCTCAA TCTTTTGCTCACTGCTTGCCCAAAGATTGAGACCTTGGAACTTATCAATCCAGAGATTGCAATGTCTGATGCACAGGTGACTGTTGAACTGAGCAGTCCA ACATTAAAGAGAGTTTATGTTGAAGCAATCAGTTTGGACAAGTTTATCTTGGAGGCAGATAGCATTGAATGCTTGCACTTGAAGGATTGCGCTCTTGAGC TATTTGAACTCATTGGAAAGGGTACTTTGAAGCATTTCAAAATTGATGACGTAAGTGTTATTCATCTTGATATTGGTGACACTGTTGATAATCTTGAGAT CATAGATGTCAGCAACTTCACTATTATGTGGCCAAAGTTCTACCAAATGATCTCCAAATCATCAAAGTTGACAAAACTTCGTCTTTGGGATGTGGTCTTC GATGACGAGGATGAGATTGTGGATTTAGAAACTATTGCTGTTTGTTTCCCGCATCTCATCCATCTTGCATTAAGTTATGACTTGAGAGATGGAGTGGTTA ACTATGGCCTGCAAGGGTCTTCCCACTTGGAGAATGTCTTTGTGTTGGAGCTCGGATGGACTATAATTAATGATCTCTTCTCTCATTGGGTTGAGGGGCT GCTAAAACTTTGTCCAAATCTCAGGAAGCTGGTAATTCATGGTGTTGTTTCAGAGGCCAAAAGTCATGAAGAATGCCAAATGTTGGCCAATTTTACATCA TCCATAGTTCAGCTCATGAGAAAATACATGCATGTAGATGTGCAGTTCGATTATGAATAG
AA sequence Show only first row Show all	>Potri.009G164200.4 pacid=42771908 polypeptide=Potri.009G164200.4.p locus=Potri.009G164200 ID=Potri.009G164200.4.v4.1 annot-version=v4.1 MEHLPVEVIGNILSRLGGARDVVIASATCRKWREAWRKHLHTLSFNSNDCNVYQDLTTSRLQILITQTIFQTTGLQGLSILMDDVDEFSASTVIAWLMYT RETLHRLIYNVRTNPNVNILEICGRQKMEMLELSHNSITGVEPNFQRFPCLKSLSLSYVSISALDLNLLLTACPKIETLELINPEIAMSDAQVTVELSSP TLKRVYVEAISLDKFILEADSIECLHLKDCALELFELIGKGTLKHFKIDDVSVIHLDIGDTVDNLEIIDVSNFTIMWPKFYQMISKSSKLTKLRLWDVVF DDEDEIVDLETIAVCFPHLIHLALSYDLRDGVVNYGLQGSSHLENVFVLELGWTIINDLFSHWVEGLLKLCPNLRKLVIHGVVSEAKSHEECQMLANFTS SIVQLMRKYMHVDVQFDYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67190			F-box/RNI-like superfamily pro...		Potri.009G164200 [exp]	0	1
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	4.69	0.7969
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	10.19	0.7747
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.008G144400 [exp]	21.21	0.7959	Pt-TOM3.1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.001G197600 [exp]	27.38	0.7717
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Potri.014G145400 [exp]	30.91	0.6950
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.002G226900 [exp]	38.41	0.7766
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	39.49	0.7051
AT3G24160		PMP	putative type 1 membrane prote...		Potri.003G178400 [exp]	44.98	0.7632	Pt-PMP.2
AT3G26370			O-fucosyltransferase family pr...		Potri.008G185200 [exp]	55.31	0.7546
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014400 [exp]	65.81	0.7395

Compare expression of checked genes

Potri.009G164200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.