Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08320 574 / 0 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT3G12250 313 / 1e-103 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 311 / 5e-103 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06839 306 / 3e-99 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G06960 299 / 5e-98 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 276 / 2e-87 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G22070 265 / 4e-84 bZIP TGA3 TGA1A-related gene 3 (.1) AT1G77920 263 / 2e-83 bZIP bZIP transcription factor family protein (.1) AT5G10030 256 / 8e-81 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 251 / 9e-80 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203400 [exp] 841 / 0 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 333 / 5e-109 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G058800 [exp] 330 / 8e-108 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.001G029800 [exp] 325 / 2e-106 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.016G036500 [exp] 323 / 1e-105 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 318 / 1e-103 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 318 / 2e-103 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 313 / 8e-102 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.005G170500 [exp] 275 / 2e-88 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004876 [exp] 643 / 0 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 637 / 0 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 483 / 9e-168 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 447 / 3e-154 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10026166 [exp] 327 / 5e-109 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 326 / 2e-108 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 320 / 5e-106 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10023822 [exp] 305 / 3e-98 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10009055 [exp] 279 / 1e-89 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10041475 [exp] 271 / 3e-85 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.009G164300.4 pacid=42771119 polypeptide=Potri.009G164300.4.p locus=Potri.009G164300 ID=Potri.009G164300.4.v4.1 annot-version=v4.1 ATGGCTAGCCACAGAATTGGAGAGACTGGTTTGTCAGACTCAGGTCCCTCTAATCAGCATCTCCCTTATGCACTTCTCCATGGAATCAACACCCCATCAA CCAGTTTCATTTGTATTTTTGCCTATAGTAATCAAGAAGGATCTGCTTTTGATTTTGGAGAGCTAGAAGAAGCAATTGTGCTGCAAGGAGTTAAGATTAG GAATGATGAAGCTAAAGCACCTTTATTTACAGTAACAGGCAGACCTGCAGCTACACTGGAAATGTTTCCTTCATGGCCAATGAGATTCCAAGAAACCCCA AGAGGAAGTTCAAGGTCAGGAGGGGAGAGTACTGACTCAGGATCAGCATTAAACACTCTTTCAAGCAAAGCTGAAGCCCATCTGGAACCAGAATCTCCCA TCAGTAAAAAAGTTTCTTCTTCAGATCATTACAATCAGGCTTTTTATCAGAAGCATCTACAGTTTCAAGAACAGCAACAAGTAGATATGGCTAATGATAC ATCAAGAACAGGGGGGCCCTCTCAACAGAATCAATCACCTGCCAAATCTCCCCAAGAAAAGAGAAAAGGTTCAACATCAGAGAAACAACTTGATGCCAAG ACATTGAGACGTTTAGCTCAAAACAGGGAAGCTGCAAAGAAGAGTCGACTGAGGAAAAAGGCATATGTCCAGCAGCTAGAGACTAGTAGAATAAAACTTA CTCAGTTAGAACAAGATCTTCAGCGTGCAAGACAGCAGGGGCTGTTCTTGGGTGGCTGCGGTGGTGCCGGTGGCAATATCAGCTCTGGAGCTGCAATATT TGACATGGAGTATGCAAGATGGCTAGAAGACGACCACCGGCACATGTCGGAGCTCCGGACAGGATTGCAAGCACATTTATCGGACGGTGACCTTAGGGTT ATAGTAGATGGGTATATTTCACATTACGATGAAATTTTCCGGCTCAAGGTAGTGGCTGCAAAATCTGATGTCTTTCACCTGATTACCGGAATGTGGTCCA CTCCAGCCGAGCGTTGCTTCCTGTGGATGGGTGGTTTTAGGCCCTCAGAACTCATCAAGATGTTAATATCCCAGCTAGACCCCTTAACAGAACAGCAAGT CATGGGGATTTACAGCCTGCAACAATCTTCACAGCAAGCAGAAGAGGCTCTCTCCCAAGGCCTAGAGCAGCTCCAACAGTCTCTGGTTGACACCATTGCT GGCGGACCGGTCATTGGTGGAATGCAGCAGATGGCAGTGGCGTTAGGCAAGCTTGCCAATCTTGAAGGGTTCGTTCGCCAGGCTGATAACTTGAGACAAC AAACCCTTCACCAACTCCGTCGAATATTGACTGTAAGACAGGCAGCACGGTGTTTTCTGGTGATCGGAGAATATTATGGGAGATTACGGGCACTCAGTTC CCTCTGGGCATCTCGTCCTCGAGAGACAATGATCAGTGAAGATAACTCATGCCAAACCACGACTGATCTACAAATGGTTCAACCTTCACAAAATCATTTC TCCAACTTTTAA
AA sequence Show only first row Show all	>Potri.009G164300.4 pacid=42771119 polypeptide=Potri.009G164300.4.p locus=Potri.009G164300 ID=Potri.009G164300.4.v4.1 annot-version=v4.1 MASHRIGETGLSDSGPSNQHLPYALLHGINTPSTSFICIFAYSNQEGSAFDFGELEEAIVLQGVKIRNDEAKAPLFTVTGRPAATLEMFPSWPMRFQETP RGSSRSGGESTDSGSALNTLSSKAEAHLEPESPISKKVSSSDHYNQAFYQKHLQFQEQQQVDMANDTSRTGGPSQQNQSPAKSPQEKRKGSTSEKQLDAK TLRRLAQNREAAKKSRLRKKAYVQQLETSRIKLTQLEQDLQRARQQGLFLGGCGGAGGNISSGAAIFDMEYARWLEDDHRHMSELRTGLQAHLSDGDLRV IVDGYISHYDEIFRLKVVAAKSDVFHLITGMWSTPAERCFLWMGGFRPSELIKMLISQLDPLTEQQVMGIYSLQQSSQQAEEALSQGLEQLQQSLVDTIA GGPVIGGMQQMAVALGKLANLEGFVRQADNLRQQTLHQLRRILTVRQAARCFLVIGEYYGRLRALSSLWASRPRETMISEDNSCQTTTDLQMVQPSQNHF SNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	0	1
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	1.00	0.8762	STGA1.3
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	2.00	0.8686
AT3G02430			Protein of unknown function (D...		Potri.003G008600 [exp]	2.64	0.8125
AT3G05990			Leucine-rich repeat (LRR) fami...		Potri.008G150200 [exp]	3.74	0.7797
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	4.00	0.8107
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	4.24	0.8341
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	6.63	0.7893	Pt-SCL1.2
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Potri.005G038100 [exp]	7.00	0.7345
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.003G109400 [exp]	8.24	0.7736
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	10.67	0.8138

Compare expression of checked genes

Potri.009G164300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.