Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22450 960 / 0 unknown protein AT4G29790 338 / 2e-97 unknown protein AT2G19390 327 / 2e-93 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203500 [exp] 2049 / 0 AT5G22450 958 / 0.0 unknown protein Potri.010G238400 [exp] 822 / 0 AT5G22450 513 / 8e-161 unknown protein Potri.008G020600 [exp] 798 / 0 AT5G22450 543 / 2e-172 unknown protein Potri.006G146600 [exp] 370 / 4e-108 AT2G19390 1068 / 0.0 unknown protein Potri.018G056400 [exp] 204 / 4e-53 AT2G19390 1022 / 0.0 unknown protein Potri.006G146700 [exp] 58 / 6e-09 AT4G29790 203 / 2e-60 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004878 [exp] 1320 / 0 AT5G22450 916 / 0.0 unknown protein Lus10020607 [exp] 1311 / 0 AT5G22450 916 / 0.0 unknown protein Lus10000530 [exp] 64 / 6e-11 AT5G22450 71 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G164400.2 pacid=42771015 polypeptide=Potri.009G164400.2.p locus=Potri.009G164400 ID=Potri.009G164400.2.v4.1 annot-version=v4.1 ATGCCGCCATTTCCACAATGTGTGCCTTTGGAGCCAATTACGTTAGGCAATCAGAAATATACTCGGTCCGGAGAGGTGAGGAGGGTTTTGGGAGTTCCTC CCAGTAGTGCGTCAGATGATCATTCGTTTGGAGTTGCACATCCCAAGCCGATGCCTCCAGTAGCAACGGAGGAGCTAAAGCATTTTAAACAAAGTGTGCA AGATACTTCTAGAAAGGCCAAGGACAGAGCAAAACTGTTGCGCGAATCCTTATCTAAATTGGAAAGGTATAGAGAAGCCTTAAGCTCAAACAAACGACAA AGGAGTGAGCTTTCACTGAATGAGAAGTCAAATTTAGCGAATGCAGCAAAGGCAGGGGGTCAGATTCATAGGAATCCTCATGATATGGCTCAAAGATTGA AGGACAGGACCAAGAGTACTGGGCTGAATAAGCGTGTTCGTACTTCAGTGGCAGATGTGCGGGCAGATGGTAGGTCCACAATGCCCTCAAGGCAACAGAT GGTAACGGATAAGGGTGGAGATATGCTCCAGGATGTTGGTGCTGCTGCTGTTCGGTTTGAAGAAAATATCCGCAGATTGCCTGCTGCGGGTGAAAGATGG GATACAAAAAATAAAAAAAAGCGTTCTGTTGGGCTAATGAGTAATAGAGTTATAAATGGTGATCGAGAACAAAAACAAACTATACCTTCCAAGATGAGCG CTGACTCTAAGTTGCGATCATGTGATGCTCAGGGTTTCAGATCAAAGTCGTCTGCTGGAATCAGTGGAATGAACAAATTGGATGGTTCTTTCGAACCTAG TAGTTCAGATACCGGCTCAGTCCTTAAGAATGAAATGGAAAGTGGTCCTCTTCCAAGAGACTGTAAAGCTCTTTCAGAGCATAAGGCTGTGACAAAAGGA ACAAATAAGTCAAATACTCATGAGGATAATTTAGCAAGCACTCCTATTACAGTGATAAAAGCAAAGGTTTCTCGAGCACCACGTACTGGGTCCATCATGC TGCTGGATTCATCGCTTAAAGTTCACCCATCTCCCACATCCCTTCAAGGTTTGGAACAGCCTACAAGTTCAAATAAAGTCCCAGTGCCTGGAGTGGTAAA TAACCACAGGGGTCAATTGTCGGCAGGCTCATCTTCACATGCTATGGCTAAGTGGGTTGGTCAGAGACCACACAAAAACTCGCGTTCACGGAGGGCAAAT GTAATTTCTCCTGGTTCAAACCATATTGAAGCTCAGATGTCATCTCAAGGTTTTCCCACTTCTGATTTTAGTGTCAGAAGTTCTTCCATTGGAATCAATG GATCTCTGATTGCCAGCAATCTAGATACTAACACTCCAAAGTTCAAGAGGGAACTTGAGAGTGTTCAATCTCCCTTTGGGTTATCTGAAAGTGAAGAATC AGGAGCTGGAGAGAATAAACCAAAGGACAAAGGAACAGATAGTAGTGAGGTTTCTCTTTCTGCAACTCAAAAAGTTGGAACTTCTGTATTGCCTACTAAG AAGAATAAATCATCAACTAATGAAATTGGGGATGGCATACGGAGACAAGGAAGGAGTGGACGAGTTTCATCCTTAACAAGGCCAGCTAGTCATCCAGTGA GGGAGAAGTTAGAGAATCTTCCAGCTGCTAAGCCATTTCAGAGTACAAAGGGTGCTTCTGATAAAAATAAGAGTAAAACTGGCCGTCTACCTTCCAAAAA GCTGAAAGATCAGAAGGCTTTAATGCATGTTGGACTGGTGCCCAACAGTGGTTCCTTAGATTTTACAGGTGAATCTGGTGATGATCATGAAGAACTATTT TCAGCTGCTAATTCTGCTTGGAAAGCTAGTGACCTTGCCTGTTCCGGTCCTTTTTGGAAGAAGATGGACTCTATTTTTGCTTCTGTCAGCTTAGAGGATC TTTCCTACTTGAAGCAACAGCTAACTTCTGCGCAAGGGCTTGATGAGTGTTTTTCTCAAATGCTTGGCACCACATATAATGTTTTGGGCGCTGTTGTGCA TAAAAAAGGACGTTCTGGTAGAATTCAAGCGGAGGACCTTAATCAAGAATCAGTCAAGACAACTTTATGTGGAAGAGCTGATATGGGAAGTTTGGACAAG GGTGCTCTGTTATACCAAAGAGTTCTTTCTGCTTTAATTGAAGAAGATGAAAGTGAAGAATTTTACCTACAAAGTGAATCGAAGAATATGTCTCTTAACT ATGCCAGTGATGACTCTCATTGTGGTTCATGTAATCTGATTGATATTGAACCTAGAGATAGAGACAGAATGGAATCTGAAGTTGAGTCAAAAGTGAATTT TCAGACACAGAAGAACTGCTTCTTGGATAGACTTTCATGTGATAAGAGTGTTATATCAAATGCAATTAGGAATCCAAGCATGTCCAGTTCTTTGCATAGC AATGAACAGTGGCCAGTAGATGATGACTTTTCACATTCAGATGCTGGGCATGCCAGTGAAATATGTTCTAATGATCCAGGTGCTCTGCAGATGAGGGAAT TAAATATGCCAGGCTTCTCTTCCTCTGATGGCCAATATCAGCTGATGTGTCTGGATGAACGACTTTTGCTTGAGCTACAAAGTATTGGTTTATGCCCAGA AACACTGCCTGATGTAGCAGAGAGAGAAGTGATTATTCAAAATATAATGGAGCTTAAAGAAGGGCTGCATCAGCAGATTGGAATAATGAAAAACAAGTTA GGGAAACTTGGTAAAGCTGTGCAGAAAGGAAGAGATATGGAAAAAAGGAACGCTGAACATGTTGCAATGGACCAACTTATTCAGATGGCTTACAAAAAAC AATTGGCATGTCGTGGGAATAGTACCTCAAAAAGTACTGTCCGCAAGGTTTCAAGGCAAGTTTCATTGGCTTTTATCAAGCGCACTCTTGCTAGATGTCA CAAATTTGAAGATACTGGCAGCAGTTGTTTCAGCGAGCCTGCACTGCAGCGGGTCAACTTCTCTGCACCTATATGCAACAACGACACCAAATCTGTGGGT TGTGTGGGCTCAGGAACTGCAAGGACCACATGCAATGAAGTCTCTAACATTCATGCTGAAGCCAGAGGATCAGGTGCTGTTTCTAGCACTTTTGAGAGAT ACGATTCTCATAGTGATAACTTTGAAAGAAGTAAGAAGAGGGAAGTGTTTATAGATGATGTTATTGGCAACCCTTCATCAAGGGTAACATCCACTCTTGA CAGTACTGTTCTTGGTGGAGTAAAAGGTAGGAGAAACGATAGAGATAGAGAACAAAGCAAGGATAATTCAAGAAGTAATTCTGTTTCTGGAGCCAGTCAC TCATCATTGGACGGAGTCAAAGGCGAGCGCAAAACAAAGTCAAAGCCCAAGCAAAAGAGTACTCATTTATTGAATTCAGGAAACGGACCTCGTGGATCTT ATCATTCAGTAGCTAATGCTAGCAATAAAATAGAGCGAGCGGGATCAATGTCTCTTGGCAACATTCCTCAGGACACCCCTAAAGAAGTTGATGAACCCAG TGATTTTCCACACTCGCAACTAAATGAGTTTGATACAATTGAACTAGGAGGATCTACTGACCTCGGTGGGCCTCAAGATCTTGGCTCTTGGTTGAATATT GGTGAGGATGGATTGCAAGGCCATGATTCCATAGGTCTTGAAATACCAATGGATGACCTTATGGAGTTGAACATGCTTATGTAG
AA sequence Show only first row Show all	>Potri.009G164400.2 pacid=42771015 polypeptide=Potri.009G164400.2.p locus=Potri.009G164400 ID=Potri.009G164400.2.v4.1 annot-version=v4.1 MPPFPQCVPLEPITLGNQKYTRSGEVRRVLGVPPSSASDDHSFGVAHPKPMPPVATEELKHFKQSVQDTSRKAKDRAKLLRESLSKLERYREALSSNKRQ RSELSLNEKSNLANAAKAGGQIHRNPHDMAQRLKDRTKSTGLNKRVRTSVADVRADGRSTMPSRQQMVTDKGGDMLQDVGAAAVRFEENIRRLPAAGERW DTKNKKKRSVGLMSNRVINGDREQKQTIPSKMSADSKLRSCDAQGFRSKSSAGISGMNKLDGSFEPSSSDTGSVLKNEMESGPLPRDCKALSEHKAVTKG TNKSNTHEDNLASTPITVIKAKVSRAPRTGSIMLLDSSLKVHPSPTSLQGLEQPTSSNKVPVPGVVNNHRGQLSAGSSSHAMAKWVGQRPHKNSRSRRAN VISPGSNHIEAQMSSQGFPTSDFSVRSSSIGINGSLIASNLDTNTPKFKRELESVQSPFGLSESEESGAGENKPKDKGTDSSEVSLSATQKVGTSVLPTK KNKSSTNEIGDGIRRQGRSGRVSSLTRPASHPVREKLENLPAAKPFQSTKGASDKNKSKTGRLPSKKLKDQKALMHVGLVPNSGSLDFTGESGDDHEELF SAANSAWKASDLACSGPFWKKMDSIFASVSLEDLSYLKQQLTSAQGLDECFSQMLGTTYNVLGAVVHKKGRSGRIQAEDLNQESVKTTLCGRADMGSLDK GALLYQRVLSALIEEDESEEFYLQSESKNMSLNYASDDSHCGSCNLIDIEPRDRDRMESEVESKVNFQTQKNCFLDRLSCDKSVISNAIRNPSMSSSLHS NEQWPVDDDFSHSDAGHASEICSNDPGALQMRELNMPGFSSSDGQYQLMCLDERLLLELQSIGLCPETLPDVAEREVIIQNIMELKEGLHQQIGIMKNKL GKLGKAVQKGRDMEKRNAEHVAMDQLIQMAYKKQLACRGNSTSKSTVRKVSRQVSLAFIKRTLARCHKFEDTGSSCFSEPALQRVNFSAPICNNDTKSVG CVGSGTARTTCNEVSNIHAEARGSGAVSSTFERYDSHSDNFERSKKREVFIDDVIGNPSSRVTSTLDSTVLGGVKGRRNDRDREQSKDNSRSNSVSGASH SSLDGVKGERKTKSKPKQKSTHLLNSGNGPRGSYHSVANASNKIERAGSMSLGNIPQDTPKEVDEPSDFPHSQLNEFDTIELGGSTDLGGPQDLGSWLNI GEDGLQGHDSIGLEIPMDDLMELNMLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22450			unknown protein		Potri.009G164400 [exp]	0	1
AT4G30790			unknown protein		Potri.006G180800 [exp]	1.73	0.8190
AT2G19390			unknown protein		Potri.006G146600 [exp]	4.47	0.8585
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	4.89	0.8190	Pt-SWP.2
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	7.54	0.7629
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.002G139700 [exp]	10.39	0.7633
AT3G45830			unknown protein		Potri.001G233800 [exp]	13.63	0.8300
AT2G24960			unknown protein		Potri.013G025200 [exp]	14.38	0.7609
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	17.32	0.7606
AT5G61450			P-loop containing nucleoside t...		Potri.003G108000 [exp]	18.16	0.7491
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	19.07	0.7688

Compare expression of checked genes

Potri.009G164400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.