Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44510 439 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G08310 423 / 1e-149 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G22460 338 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48410 317 / 1e-106 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 315 / 2e-106 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 301 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 291 / 2e-97 alpha/beta-Hydrolases superfamily protein (.1) AT3G03240 288 / 5e-96 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 288 / 2e-95 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 278 / 7e-92 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164900 [exp] 376 / 2e-130 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 374 / 9e-130 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237700 [exp] 332 / 2e-113 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 321 / 8e-109 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 309 / 3e-104 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 310 / 7e-104 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 308 / 1e-103 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 154 / 2e-42 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G131300 [exp] 153 / 4e-42 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020606 [exp] 505 / 0 AT3G44510 417 / 2e-146 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004879 [exp] 499 / 6e-178 AT3G44510 409 / 3e-142 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004880 [exp] 330 / 7e-112 AT5G22460 439 / 7e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008968 [exp] 320 / 4e-108 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 318 / 1e-107 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 316 / 7e-107 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 314 / 5e-106 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 316 / 2e-105 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 311 / 5e-105 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 310 / 1e-104 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.009G164600.1 pacid=42772482 polypeptide=Potri.009G164600.1.p locus=Potri.009G164600 ID=Potri.009G164600.1.v4.1 annot-version=v4.1 ATGGTTTATCAGGCAACAGAACTTCCTCCACCACAGAGTGATCAGTCACCAGACAATCCTCCCGGAAACGCACCAAGAATCAAACTTAGAGATGGAAGAT ATCTGGCTTACAGGGAGCAAGGAGTTCCCAAGAACCAATCAAAGTACAACGTTATTATTGTTCATGGTTTTGGAAGCTCCAAAGAAATGAATTTTCTGGC ACCTCAAGGGATGATCGAAGAGTTGGGGATATATTTTCTGCTATATGACCGGGCTGGGTATGGAGAAAGTGATCCGAACCTAAGGCGATCAGTCAAGAGT GAAGCACTTGACATTCAAGAACTTGCTGATCAATTAGAGATAGGATCCAGGTTTTATGTGATCGGAGTCTCAATGGGATCATACCCCATCTGGAGTTGCC TCAAATACATACCACAAAGGTTAGCAGGTGCAGCTCTAATAGTCCCGGTTGTGAATTATAATTGGCCTTCTCTTCCCAAAAAGCTGATAAGAGAGGACTA TAGAAGGAATCTTGTCCAGTGGACATACCGGTTTGCAAAATATGCTCCTGGACTCCTGCACTGGTGGGTTACGCAGAAGTGGACCCCTTCAACTTCTGTA CTGGAAAAAAACGCTGCATTCTTTAACACTCACGACATAGAAGTCTTGAAGAAGATACCAGGATTCTCAATGCTAAGCCAGGAAAAAATACGGCAACGAG ATGTTTTCGATACTCTCCGTCATGACTTTATAGTGGCTTTTGGAGACTGGGAATTTGATCCAATGGAACTAAGTAACCCATTCCTGCAGAATGAAGGCTC TGTTCACATCTGGCAAGGTTATGAAGACAAGGTTGTGCCATTTCAACTTCAAAGATGTATTTCAAAAAAGCTACCCTGGATTCAGTATCATGAAGTTCCT GGAGGTGGACATCTAATTGTGCATTATACTGGTTTATGCGAGGCTGTTTTGAGAGCACTTTTGCTAGGAGAAGAGCCTCTTACATTAGACCAAATACATC CATAA
AA sequence Show only first row Show all	>Potri.009G164600.1 pacid=42772482 polypeptide=Potri.009G164600.1.p locus=Potri.009G164600 ID=Potri.009G164600.1.v4.1 annot-version=v4.1 MVYQATELPPPQSDQSPDNPPGNAPRIKLRDGRYLAYREQGVPKNQSKYNVIIVHGFGSSKEMNFLAPQGMIEELGIYFLLYDRAGYGESDPNLRRSVKS EALDIQELADQLEIGSRFYVIGVSMGSYPIWSCLKYIPQRLAGAALIVPVVNYNWPSLPKKLIREDYRRNLVQWTYRFAKYAPGLLHWWVTQKWTPSTSV LEKNAAFFNTHDIEVLKKIPGFSMLSQEKIRQRDVFDTLRHDFIVAFGDWEFDPMELSNPFLQNEGSVHIWQGYEDKVVPFQLQRCISKKLPWIQYHEVP GGGHLIVHYTGLCEAVLRALLLGEEPLTLDQIHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44510			alpha/beta-Hydrolases superfam...		Potri.009G164600 [exp]	0	1
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Potri.004G055600 [exp]	2.44	0.5592	APG7.1
AT1G06060			LisH and RanBPM domains contai...		Potri.002G029700 [exp]	8.48	0.5366
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.010G252900 [exp]	18.73	0.5117
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	23.49	0.5420
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.002G152300 [exp]	31.62	0.5128
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.014G078300 [exp]	34.87	0.4670	Pt-SSE1.1
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G077400 [exp]	40.69	0.4644
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.009G060200 [exp]	46.31	0.5037	ARP902,Pt-ARP7.2
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	54.68	0.4757
AT5G07300		BON2	BONZAI 2, Calcium-dependent ph...		Potri.003G055501 [exp]	80.77	0.4682

Compare expression of checked genes

Potri.009G164600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.