Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48410 375 / 3e-129 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 372 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 370 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 359 / 3e-123 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 348 / 3e-119 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 346 / 2e-118 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 333 / 1e-113 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 320 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 319 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203700 [exp] 427 / 1e-150 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237700 [exp] 400 / 5e-140 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 397 / 1e-138 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 393 / 6e-137 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164600 [exp] 386 / 1e-134 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G021200 [exp] 383 / 3e-133 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 373 / 2e-128 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 129 / 2e-33 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G131300 [exp] 129 / 3e-33 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008968 [exp] 404 / 3e-141 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10004880 [exp] 404 / 7e-141 AT5G22460 439 / 7e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10043437 [exp] 395 / 8e-138 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 395 / 1e-137 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 378 / 4e-131 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 378 / 1e-130 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 374 / 2e-129 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 374 / 6e-129 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 376 / 1e-128 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 372 / 1e-128 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.009G164900.4 pacid=42770988 polypeptide=Potri.009G164900.4.p locus=Potri.009G164900 ID=Potri.009G164900.4.v4.1 annot-version=v4.1 ATGTTTACCAAGGCAGTGATTGTGTTGTTGATTAGTCTTCTGGTATGGACTTATCAGACTATAATACAGCCTCCCCCTCCGAATATTTGTGGACTTCCAG GTGGTCCTCCTGTTACTTCTCCTCGAATCAAACTCAGCGATGGAAGGTATCTAGCTTACAGAGAGAGAGGGGTTGCCAAAGAGAAATCTGAATTCAAAAT CATCATGGTTCATGGCTTTGACAACTCCAAGGACATGGCTCTTGTAGCCTCTCAGGAACTAATTCTTGAGTTGAGGATATATTTTCTCTCCTTCGACCGC GCAGGGTACGGAGAGAGTGATCCGAATCCAAATCGCTCGGTAAAGAGTGACACATTTGATATTCAAGAGCTTGCAGACAAATTACAGCTAGGATCAAATT TCTATGTGCTTGGAATCTCCATGGGAGGCTATCCCACTTGGGGATGCCTCAAATATATACCAAACAGGCTAGCAGGTGCAGCTCTTGTGGTTCCAATTGT CAATTACTGGTGGCCTTCCATTCCTTGTCATCTATCCAGGGAGGCCTACAAGAGACAACTTCAGCGAGACCAATGGAAACTTCGGATAGCCCATTACGTT CCTGGACTACTATACTGGTGGATGAGCCAGAAATGGTTCCCGTCATCTTCTTATGTGGAGATAGTGCCAGAAGTATATGGCAATAGAGACAAACAAATCT TGAAGATGATGTCAGGAACATTGACTCATAATCAGACAATGATAAGACAACAAGGTGTTTTTGAATCTCTTCATCGAGACCTGATGGTGGGTTTTGGAAG TTGGGATTTCGATCCTATGGAACTAAGTAATCCATTCCCACACAATGAGAGTTTTATTCACATCTGGCAAGGTTTTGAGGATCCATTAGTGCCAGTTAAA CTCCAGCGATATGTTTGCAGGAAGCTGCAGTGGATTCGCTATCATGAAGTCACTGATGGAGGACACCTGATCATGTATGACACTAATTTGTTTGAAGCCA TCCTGAGGGAACTCTTGCTTCCCTCCGGTGTATGA
AA sequence Show only first row Show all	>Potri.009G164900.4 pacid=42770988 polypeptide=Potri.009G164900.4.p locus=Potri.009G164900 ID=Potri.009G164900.4.v4.1 annot-version=v4.1 MFTKAVIVLLISLLVWTYQTIIQPPPPNICGLPGGPPVTSPRIKLSDGRYLAYRERGVAKEKSEFKIIMVHGFDNSKDMALVASQELILELRIYFLSFDR AGYGESDPNPNRSVKSDTFDIQELADKLQLGSNFYVLGISMGGYPTWGCLKYIPNRLAGAALVVPIVNYWWPSIPCHLSREAYKRQLQRDQWKLRIAHYV PGLLYWWMSQKWFPSSSYVEIVPEVYGNRDKQILKMMSGTLTHNQTMIRQQGVFESLHRDLMVGFGSWDFDPMELSNPFPHNESFIHIWQGFEDPLVPVK LQRYVCRKLQWIRYHEVTDGGHLIMYDTNLFEAILRELLLPSGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22460			alpha/beta-Hydrolases superfam...		Potri.009G164900 [exp]	0	1
AT3G08940		LHCB4.2	light harvesting complex photo...		Potri.006G099500 [exp]	3.87	0.9636	LHCB4.3,Lhcb4
AT5G24460			unknown protein		Potri.010G149800 [exp]	4.69	0.9628
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G222300 [exp]	9.48	0.9578
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Potri.005G206700 [exp]	10.58	0.9548	OEE2.1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.018G089100 [exp]	10.95	0.9498
AT4G33840			Glycosyl hydrolase family 10 p...		Potri.009G087800 [exp]	12.12	0.9162
AT4G10340		LHCB5	light harvesting complex of ph...		Potri.019G063101 [exp]	14.49	0.9530
AT4G21780			unknown protein		Potri.011G136500 [exp]	14.96	0.9501
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.005G239300 [exp]	15.81	0.9467	LHB1.3,Lhcb1-2
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147602 [exp]	17.46	0.9114

Compare expression of checked genes

Potri.009G164900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.