Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40810 511 / 0 Cytochrome C1 family (.1.2) AT3G27240 504 / 0 Cytochrome C1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203800 [exp] 586 / 0 AT5G40810 479 / 3e-172 Cytochrome C1 family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022327 [exp] 480 / 2e-172 AT5G40810 506 / 0.0 Cytochrome C1 family (.1.2) Lus10022328 [exp] 479 / 1e-171 AT5G40810 504 / 0.0 Cytochrome C1 family (.1.2) Lus10041579 [exp] 412 / 2e-145 AT3G27240 424 / 4e-150 Cytochrome C1 family (.1) Lus10041577 [exp] 342 / 1e-119 AT5G40810 343 / 5e-121 Cytochrome C1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0318 [poplar] [flax] Cytochrome-c PF02167 [poplar] [flax] Cytochrom_C1 Cytochrome C1 family
Representative CDS sequence Show only first row Show all	>Potri.009G165000.1 pacid=42771844 polypeptide=Potri.009G165000.1.p locus=Potri.009G165000 ID=Potri.009G165000.1.v4.1 annot-version=v4.1 ATGGCTGGAGGAGGGGTGATCCACCAGCTTCTGAGGAGAAAACTTCAGTCACACTCTGGTGCCACTTCAGTTTTATCTTCCTTCACTTCAAAAAAAGTTC ATGGTGATGCTGGATCTGTGGGTATGAAGTCCCTAAGAGCGTTTGCATTATTTGGAGCTGGACTTTCAGGGTTTCTGAGTTTTGCATCAGTAGCATCCGC GGATGAGGCTGAACATGGGTTAGAGTGTCCAAGCTATCCTTGGCCACACAAAGGGATTCTAAGTTCATATGACCACTCTTCGATTCGTCGTGGTCAGCAG GTGTACCAGCAAGTATGTGCATCTTGCCACTCCATGTCCCTGATTTCATATCGTGATTTGGTGGGTGTTGCATATACAGAAGAGGAGACCAAGGCTATGG CGGCAGAGATTGAGGTGGTTGATGGACCTAATGATGAGGGTGAGATGTTTACTCGTCCGGGTAAACTCAGTGACCGTTTTCCTCAGCCATATGCGAATGA ACAAGCAGCTAGATTTGCTAATGGAGGAGCATATCCTCCAGATTTAAGTCTTATTACAAAAGCTCGTCACAATGGTCAAAACTATGTGTTTGCTCTTTTA ACTGGTTATCGTGATCCTCCTGCTGGTGTTTCGATCCGAGAGGGTTTGCACTACAATCCTTACTTTCCTGGGGGAGCTATTGCCATGCCAAAGATGCTCA TTGATGGTGCTGTTGAGTATGAAGATGGTACCCCTGCAACAGAAGCTCAGATGGGAAAAGATGTTGTGTCGTTTTTGTCATGGGCTGCAGAACCAGAAAT GGAAGAGAGGAAACTGATGGGTTTTAAGTGGATATTTGTACTTTCCTTGGCGTTGCTTCAAGCTGCATATTACCGGCGTTTGAAGTGGTCTGTTCTCAAG TCTCGCAAGCTGGTTCTTGATGTTGTCAATTAG
AA sequence Show only first row Show all	>Potri.009G165000.1 pacid=42771844 polypeptide=Potri.009G165000.1.p locus=Potri.009G165000 ID=Potri.009G165000.1.v4.1 annot-version=v4.1 MAGGGVIHQLLRRKLQSHSGATSVLSSFTSKKVHGDAGSVGMKSLRAFALFGAGLSGFLSFASVASADEAEHGLECPSYPWPHKGILSSYDHSSIRRGQQ VYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALL TGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLK SRKLVLDVVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40810			Cytochrome C1 family (.1.2)		Potri.009G165000 [exp]	0	1
AT5G16660			unknown protein		Potri.019G041700 [exp]	1.00	0.8818
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.017G001800 [exp]	2.23	0.8452	Pt-COS1.2
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.008G056300 [exp]	2.82	0.8387	CTIMC.1
AT3G26340			N-terminal nucleophile aminohy...		Potri.008G177000 [exp]	3.00	0.8672	Pt-PBE1.2
AT5G41340		ATUBC4, UBC4	ubiquitin conjugating enzyme 4...		Potri.015G073400 [exp]	3.60	0.8282
AT4G29480			Mitochondrial ATP synthase sub...		Potri.006G231900 [exp]	5.47	0.8271
AT5G59613			unknown protein		Potri.010G207600 [exp]	8.83	0.8753
AT1G51980			Insulinase (Peptidase family M...		Potri.010G036700 [exp]	9.16	0.8284
AT1G56450		PBG1	20S proteasome beta subunit G1...		Potri.006G242000 [exp]	12.64	0.8179
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.009G062200 [exp]	13.63	0.8431	Pt-ANT2.1

Compare expression of checked genes

Potri.009G165000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.