Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SLY1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17980 1002 / 0 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G31740 222 / 3e-69 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G36100 120 / 8e-31 Sec1/munc18-like (SM) proteins superfamily (.1) AT1G02010 96 / 2e-20 SEC1A secretory 1A (.1.2) AT1G12360 93 / 2e-19 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT4G12120 85 / 6e-17 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G77140 77 / 1e-14 ATVPS45, VPS45 vacuolar protein sorting 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G204400 [exp] 1188 / 0 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 94 / 7e-20 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.003G115800 [exp] 92 / 3e-19 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.014G069300 [exp] 91 / 7e-19 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.005G188000 [exp] 71 / 2e-12 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.002G071600 [exp] 63 / 5e-10 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023936 [exp] 1045 / 0 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 1041 / 0 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10015870 [exp] 90 / 2e-18 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10024558 [exp] 86 / 2e-17 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10009293 [exp] 85 / 8e-17 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10032196 [exp] 84 / 1e-16 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [poplar] [flax] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Potri.009G165300.1 pacid=42772559 polypeptide=Potri.009G165300.1.p locus=Potri.009G165300 ID=Potri.009G165300.1.v4.1 annot-version=v4.1 ATGGCTCTCAATCTGCGTCAAAAACAAACAGAATGTATAATCCGGATGCTAAATCTGAACCAACCTTTGAATGCAACTGGTACTGCTAATGAAGAGGTTT ACAAGATCTTGATCTATGATAAATTTTGTCAAAATATATTATCTCCATTGATTCATGTCAAGGATCTGAGAAAACATGGGGTTACTCTTTATTTCCTTAT TGACAAGGATCGAAAGCATGTCCATGATGTCCCTGCTGTGTACTTTGTTCAACCAAGTCAAGTTAATGTTCAGAGGATTGTTGCTGATGCGTCACGCTCG CTTTATGATAGCTTGCACCTTAATTTTTCATCATCTATTCCTCGTCCGCTTCTTGAGGATCTTGCATCAGGGACATTGAATTCGGAGTCCATAGATAAGA TTTTGAAGGTGCATGACCAGTATTTGGAGTTTGTGACTTTGGAGCATAACTTGTTTTCGTTGGCGCAGAAGTTTTGTTATGTTCAGTTGAATGATCCATC TGCTGGTGATAGAGAGATTGAGGAGATTGTTGAGAAGGTTGCTAGTGGGTTATTTTGTGTGTTGGCAACACTCGCTGTTGTGCCAGTTATTAGGTGTCCA AGTGGAGGGCCAGCAGAGATGGTGGCGTCGGTGTTAGATCAGAAGTTGAGAGATCATTTATTGTCAAAGAACAATTTGTTTACAGAAGGTGGGGGTTTTG CGAGCTCATTTCAGAGGCCAGTTTTGTGTATATTTGATCGAAATTTTGAATTGTCAGTTGGAATACAACATGATTTTAGGTATCTTCCTCTTGTTCATGA TGTTCTTGGCTTGAGGCTTAACAGGTTGAGTGTGCCAGGGGAAAAGGGTGGGATGAGGTCATATGAATTGGATAGTTCTGATCCATTTTGGGTGGCAAAT GGGTCCCTGGAGTTTCCTGAAGTTGCAGTGGAAATTGAGACTCAATTGAACAAGTATAAGAAGGATGTTGATGAGGTTAATAGGAGGACTGGAGGAACTG ATGGGGCTGAGTTTGATGGGACGGACTTGATTGGGAACACCAAGCATTTGATGAATGCTGTGAACTCTCTGCCTGAATTGACAGAGCGGAAGCAGGTGAT TGATAAGCACACAAACATTGCAACTGTTTTGTTGGGTGAGATCAAGGAGAGGTCTCTTGATTCCTATGCGAAAAAAGAGAATGACATGATGGTCAGAGGA GGGATTGATCGGAATGAACTTTTGGGTGTGCTTAGAGGGAAAGGAACCAAGATGGATAAGCTCAGATTTGCAATCATTTACCTTATATGTTCTGAAAGTA TTAATCCGGCAGAAGTGGAAGCCATTGAAACTTCTCTAAGGGAGTCTGAGGTTGATACTTGTGCATTCCAGTATGTGAAGAAAATGAAGTCCTTAAATGT GTCATTGGCATCATCAAATTCTGCCAGTCGAAGTAACATTGTTGATTGGGCTGAAAAACTTTATGGGCAGTCAATTAGCGCTGTGACAGCTGGTGTGAAG AATTTATTATCTAGTGATAGGCAGCTGGCATTAACGAGGATTGTGGAAGCTTTGATGGAGGGGAGGCCAAATCCTGATGTGGATTCTTACCTTGTGTTTG ATCCTCGAGCTCCCAAGTCAGGCTCTGGGACCAGTGGCAGCCATCTGAAAGGGCCATATAAAGAAGCTATAGTGTTTATGATCGGTGGTGGTAATTATAT GGAGTATGGAAGCTTACAAGAATTTGCACAGCGTCAGCAGCCTGTCAAGCATGTTATATATGGAACAACAGAAATCCTCACTGGAATTGAGTTCGTTGAG CAGCTTACAGTGTTGGGGCAGAAGATGGGATTGGGTAGTACTGCGGCTTCTCCTGCTCCAACCCTCTAG
AA sequence Show only first row Show all	>Potri.009G165300.1 pacid=42772559 polypeptide=Potri.009G165300.1.p locus=Potri.009G165300 ID=Potri.009G165300.1.v4.1 annot-version=v4.1 MALNLRQKQTECIIRMLNLNQPLNATGTANEEVYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKHVHDVPAVYFVQPSQVNVQRIVADASRS LYDSLHLNFSSSIPRPLLEDLASGTLNSESIDKILKVHDQYLEFVTLEHNLFSLAQKFCYVQLNDPSAGDREIEEIVEKVASGLFCVLATLAVVPVIRCP SGGPAEMVASVLDQKLRDHLLSKNNLFTEGGGFASSFQRPVLCIFDRNFELSVGIQHDFRYLPLVHDVLGLRLNRLSVPGEKGGMRSYELDSSDPFWVAN GSLEFPEVAVEIETQLNKYKKDVDEVNRRTGGTDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRG GIDRNELLGVLRGKGTKMDKLRFAIIYLICSESINPAEVEAIETSLRESEVDTCAFQYVKKMKSLNVSLASSNSASRSNIVDWAEKLYGQSISAVTAGVK NLLSSDRQLALTRIVEALMEGRPNPDVDSYLVFDPRAPKSGSGTSGSHLKGPYKEAIVFMIGGGNYMEYGSLQEFAQRQQPVKHVIYGTTEILTGIEFVE QLTVLGQKMGLGSTAASPAPTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.009G165300 [exp]	0	1	SLY1.2
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.004G204400 [exp]	3.31	0.8620	SLY1.1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.002G165800 [exp]	7.34	0.8510
AT5G64970			Mitochondrial substrate carrie...		Potri.007G093300 [exp]	24.00	0.8466
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Potri.005G227400 [exp]	33.94	0.8302
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	43.26	0.7886	CAP1.1
AT5G01090			Concanavalin A-like lectin fam...		Potri.010G194700 [exp]	43.68	0.7661
AT1G26650			unknown protein		Potri.010G163400 [exp]	49.35	0.7631
AT3G08640			Protein of unknown function (D...		Potri.016G140700 [exp]	49.35	0.7855
					Potri.003G175500 [exp]	58.80	0.7952
AT5G57460			unknown protein		Potri.006G168200 [exp]	63.05	0.7585

Compare expression of checked genes

Potri.009G165300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.