Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38370 330 / 6e-116 Phosphoglycerate mutase family protein (.1) AT5G04120 50 / 4e-07 Phosphoglycerate mutase family protein (.1) AT3G50520 43 / 5e-05 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074700 [exp] 44 / 6e-05 AT5G62840 407 / 3e-144 Phosphoglycerate mutase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014434 [exp] 362 / 1e-128 AT4G38370 322 / 7e-113 Phosphoglycerate mutase family protein (.1) Lus10023935 [exp] 346 / 1e-121 AT4G38370 305 / 2e-105 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Potri.009G165400.1 pacid=42770873 polypeptide=Potri.009G165400.1.p locus=Potri.009G165400 ID=Potri.009G165400.1.v4.1 annot-version=v4.1 ATGGAAAAGAAATTGTGTTTGAGAAACAAATATTGGGTTTTAAGGCATGGAAAGAGCATTCCTAATGAAAAGGGTCTCATTGTTTCCTCTATGGAAAATG GGATCAAGGAAGAATACCAATTAGCAGATGAAGGTGTTGGTCAGGCACAGTTGGCTGGAGAATTGTTCCTTAAGGAATTGAAAGAGAGAAACATACCACT TGAAAGTGTTCGCATCTGCTACTCTCCATTTGCAAGAACGAGCCACACTGCCAAAGTTGTTGCATCTGTTTTGAATCTTCCCTTTGAAGGTCCTCAATGT AAAATGATGGGAGATCTTCGAGAACGCTATTTTGGTCCTTCATTTGAACTTTTTTCACATGATAAGTATCCTGAGATATGGGCACTTGATGAGAAAGATC CATTCACTCGACCAGAAGGTGGAGAAAGTGTTGATGATGTCGCTACTAGACTTGAAAGTGCTCTGGCAATTATCGAGTCAGAATTTCAAGGGTGTGCAGT CTTGATTGTGAGCCATGGTGACCCCTTGCAAATCTTGCAAACAGTACTAAATGCAACCAAGCAAAACACAGAGTCGTCCTCTAATGACTTGGCATCAATA ATTCAAGCAGTCAAGGTCCCTTCTGTCTTGTCTCAGCACCGGAAATTTGCACTGGTTACTGGAGAACTTAGGCCGGTAGAATAA
AA sequence Show only first row Show all	>Potri.009G165400.1 pacid=42770873 polypeptide=Potri.009G165400.1.p locus=Potri.009G165400 ID=Potri.009G165400.1.v4.1 annot-version=v4.1 MEKKLCLRNKYWVLRHGKSIPNEKGLIVSSMENGIKEEYQLADEGVGQAQLAGELFLKELKERNIPLESVRICYSPFARTSHTAKVVASVLNLPFEGPQC KMMGDLRERYFGPSFELFSHDKYPEIWALDEKDPFTRPEGGESVDDVATRLESALAIIESEFQGCAVLIVSHGDPLQILQTVLNATKQNTESSSNDLASI IQAVKVPSVLSQHRKFALVTGELRPVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38370			Phosphoglycerate mutase family...		Potri.009G165400 [exp]	0	1
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.002G263200 [exp]	2.00	0.7368
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.003G062800 [exp]	5.47	0.7215
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Potri.009G133800 [exp]	7.34	0.7823	Pt-PAD1.3
AT2G03870		EMB2816	EMBRYO DEFECTIVE 2816, Small n...		Potri.001G269500 [exp]	7.48	0.7010
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.012G139900 [exp]	7.74	0.7197
AT2G26210			Ankyrin repeat family protein ...		Potri.006G217100 [exp]	9.16	0.7148
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.008G215300 [exp]	12.00	0.7271
AT5G28050			Cytidine/deoxycytidylate deami...		Potri.010G003500 [exp]	14.89	0.7289
AT5G43830			Aluminium induced protein with...		Potri.010G081600 [exp]	15.00	0.6742
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.002G045700 [exp]	19.59	0.6282	TSA1.2

Compare expression of checked genes

Potri.009G165400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.