Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42340 671 / 0 PUB15 Plant U-Box 15 (.1) AT3G46510 456 / 2e-152 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 424 / 2e-136 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 408 / 2e-134 ATPUB14 plant U-box 14 (.1) AT1G71020 365 / 9e-118 ARM repeat superfamily protein (.1.2) AT1G23030 333 / 1e-105 PUB11 ARM repeat superfamily protein (.1) AT1G29340 248 / 2e-72 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT2G23140 245 / 9e-71 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G07360 233 / 4e-69 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G67340 222 / 5e-63 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205000 [exp] 974 / 0 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.002G009900 [exp] 778 / 0 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 474 / 1e-159 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 470 / 5e-158 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 464 / 4e-156 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 448 / 5e-150 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 399 / 1e-130 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 398 / 2e-130 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 285 / 2e-86 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012260 [exp] 655 / 0 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 654 / 0 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10037970 [exp] 450 / 2e-150 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 440 / 5e-146 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 436 / 2e-144 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 390 / 4e-127 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 389 / 3e-118 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 310 / 4e-96 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 301 / 6e-93 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007317 [exp] 253 / 3e-74 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.009G165900.2 pacid=42771629 polypeptide=Potri.009G165900.2.p locus=Potri.009G165900 ID=Potri.009G165900.2.v4.1 annot-version=v4.1 ATGGAGAGGCAGAGAGTGGTGGAAAGAGGAGAGAAGGCAGGCGTGTCAAGTTCATCCAATGGTGGAGGTGAAGTTGATGTTGTGGTGGAAATGATGGATG TGATTGAGGCCGTTGGATTGTATGTGGGGTACAGGAGGACACAAAGAAAGGAGTGCTTGAACTTGGCGAGGAGATTGAAGCTACTACTTCCTCTTTTGGA GGAGATAAAGGAGATTGGTAATTATAAATTGGTTTCTAGTGAGGGTTTGAAAACTAGTTTGGATAATTTAAAGAAGGCCCTTTTGGGTGCTAAGAAGTTG TTGAAGAAATGTAGCTGTGGAAGCAAGATTTATCTGGCAATGGAGAGTGAAGCAGTGATGAGTAGCTTTCATGCTGTATATGAAAAATTAAATCAGGCTT TGGATGATTTGCCCTATGATGAGCTAGGGATCTCAGTTGAAGTTAAAGAGCAAGTTGAGCTAACACGGATGCAACTTAAAAGAGCAAAGAAGCGGTCCGA CACCCAGGATATAGAACTGGCAATGGATTTGATGGTTGTATTTTCTAAAAAGGATGACCGAAATGCAGATAGTGCAATCCTAGAGAGACTGGCCATCAAG TTAGAGCTGCATGCTATTCCAGACTTGAAAGCAGAAGAAATAGCAGTCAGGAAACTAGTTAAAGAGAGAGGGGTTCAGAACGCTGAAAGCATGCAGCAAA TTAATGACCTTTTGGGAAAATTCAAACAGATTGCTGGGGTTGATGAAACCATTGTTCTTGATGGCCCTTTTTCTTCGAAAAGCCTTCAGAGGTGTCGGTC TTTGCTTATCCCTCATGAATTCCTATGTCCAATTACTCTGGAGATCATGGTGGATCCTGTCATTGTGGCAACTGGACAGACTTATGAAAGAGAGAGCATA CAGAAGTGGCTAAATTCTAATCATCGAACCTGCCCGAAGACTGGTCAAACTTTGGGTCATTTGTCTCTAGCATCGAATTTTGCACTCAGGAATCTTATAC AGGAATGGTGTGAGAAAAATAACTATGAACTACCCAAGAAGGATGCTTGTTTAGGCTCTGATGGCGTTTCTGCTGAGCTTAAAGAGGAAATCTCTTCCTT GGTTCAAAATCTGTCCTCCTGTGAGTTTGAAGTGCGACGAGAGGCCATCAAGAAGATCCGAATGCTTGCAAAGGAGAATCCAGACAACAGAATTTTGATT GCCAACTATGGAGGGATTCCTCCGTTGGTTCAGCTCTTGTCCTATCAAGATCCCAACATTCAAGAACACACTGTAACAGCTCTTTTGAACTTGTCAATTG ATGAAACAAACAAAAAACTTGTAGCCAGAGAGGGAGCCATTCCTGCTATAGTTAAAATTTTGCAGCATGGAACAAATGAAGCTAGAGAAAACTCTGCTGC GGCTTTGTTTAGCTTGTCAATGCTTGATGAGAACAAAGTTCTAATTGGAGCTTCGAATGGAATCCGTCCCTTGGTACACCTTTTGCAGAATGGGACTATA CGAGGTAAAAAGGATGCTGCAACTGCACTCTTCAACTTGTCTTTGAACCAAACCAACAAGTCCAGGGCCATTAAAGCAGGTATCATACCAGCATTGCTCC ATTTGCTCGAGGAGAAAAACCTTGGCATGATCGATGAAGCCCTCTCCATATTTTTACTCCTTGCATCACATCCTGAAGGGAGAAATGAAATCGGCAAACT ATCTTTCATCAAAACCCTTGTTGAAATCATAAGAAACGGGACTCCCAAGAACAAGGAATGCGCCCTATCGGTCCTTCTCCAGCTGGGGTTGCACAATTCA TCCATCATCTTAGCAGCACTTCAGTATGGAGTGTATGAACATTTGGTAGAGCTTACAAAAAGTGGAACCAACAGGGCTCAAAGGAAAGCAAATTCTATAT TACAGCATATGAAAGACGGCTACATGCAAGCTAGAAGAAGGTTACTCCTCAAAAGAAGCTACCAGGCTAATGGTTCTTAA
AA sequence Show only first row Show all	>Potri.009G165900.2 pacid=42771629 polypeptide=Potri.009G165900.2.p locus=Potri.009G165900 ID=Potri.009G165900.2.v4.1 annot-version=v4.1 MERQRVVERGEKAGVSSSSNGGGEVDVVVEMMDVIEAVGLYVGYRRTQRKECLNLARRLKLLLPLLEEIKEIGNYKLVSSEGLKTSLDNLKKALLGAKKL LKKCSCGSKIYLAMESEAVMSSFHAVYEKLNQALDDLPYDELGISVEVKEQVELTRMQLKRAKKRSDTQDIELAMDLMVVFSKKDDRNADSAILERLAIK LELHAIPDLKAEEIAVRKLVKERGVQNAESMQQINDLLGKFKQIAGVDETIVLDGPFSSKSLQRCRSLLIPHEFLCPITLEIMVDPVIVATGQTYERESI QKWLNSNHRTCPKTGQTLGHLSLASNFALRNLIQEWCEKNNYELPKKDACLGSDGVSAELKEEISSLVQNLSSCEFEVRREAIKKIRMLAKENPDNRILI ANYGGIPPLVQLLSYQDPNIQEHTVTALLNLSIDETNKKLVAREGAIPAIVKILQHGTNEARENSAAALFSLSMLDENKVLIGASNGIRPLVHLLQNGTI RGKKDAATALFNLSLNQTNKSRAIKAGIIPALLHLLEEKNLGMIDEALSIFLLLASHPEGRNEIGKLSFIKTLVEIIRNGTPKNKECALSVLLQLGLHNS SIILAALQYGVYEHLVELTKSGTNRAQRKANSILQHMKDGYMQARRRLLLKRSYQANGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.009G165900 [exp]	0	1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.005G247700 [exp]	1.41	0.8220
AT1G13680			PLC-like phosphodiesterases su...		Potri.017G098900 [exp]	3.46	0.7425
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136700 [exp]	6.32	0.7520
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	6.32	0.7956
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G075900 [exp]	7.34	0.7907
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	9.74	0.7942	ATSEB1.1
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	10.39	0.7622
AT3G24630			unknown protein		Potri.018G082300 [exp]	16.88	0.7962
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	18.33	0.7143
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	19.02	0.8019

Compare expression of checked genes

Potri.009G165900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.