Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17200 547 / 0 DSK2 ubiquitin family protein (.1) AT2G17190 524 / 0 ubiquitin family protein (.1) AT5G42220 64 / 3e-10 Ubiquitin-like superfamily protein (.1) AT4G02890 49 / 4e-06 UBQ14 Ubiquitin family protein (.1.2.3.4) AT4G05050 49 / 4e-06 UBQ11 ubiquitin 11 (.1.2.3.4) AT1G55060 49 / 4e-06 UBQ12 ubiquitin 12 (.1) AT1G23410 47 / 4e-06 Ribosomal protein S27a / Ubiquitin family protein (.1) AT3G52590 47 / 4e-06 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 47 / 4e-06 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT5G25270 50 / 5e-06 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205100 [exp] 775 / 0 AT2G17200 425 / 3e-143 ubiquitin family protein (.1) Potri.005G100200 [exp] 553 / 0 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.005G247900 [exp] 71 / 2e-12 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.002G013500 [exp] 62 / 7e-10 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.006G059700 [exp] 57 / 2e-08 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.018G115500 [exp] 56 / 7e-08 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.011G026600 [exp] 49 / 4e-06 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4) Potri.016G077200 [exp] 47 / 4e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 47 / 4e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014433 [exp] 562 / 0 AT2G17200 567 / 0.0 ubiquitin family protein (.1) Lus10023934 [exp] 550 / 0 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10034563 [exp] 61 / 2e-09 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10040001 [exp] 61 / 2e-09 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 60 / 4e-09 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10021830 [exp] 50 / 4e-06 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10018367 [exp] 49 / 4e-06 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10008873 [exp] 47 / 5e-06 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 47 / 9e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 47 / 9e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Potri.009G166000.1 pacid=42772708 polypeptide=Potri.009G166000.1.p locus=Potri.009G166000 ID=Potri.009G166000.1.v4.1 annot-version=v4.1 ATGGGAGCTGCTGGCGATTCGAGCGAGTCAAAAGTGATTAATGAACAGCAAGGGCAGGGAGAGGAGGGTGCTGTGGTGATTAATATTCGGTGCTCTAATG GTACAAAATTTACTGTGAGGACGAGCTTGGAATCAACGGTTGGGGTTTTCAAATCTCTCTTGGCTCAAAATTGTGATGTCCCACCTGATCAGCAGAGGTT GATTTATAAAGGTCGGATTTTGAAGGATGACCTGGCCCTTCATAGCTATGGTCTGCAAGCTGATCACACCATTCATATGGTTCGTGGTTTTTCCCCTGCT CCATCAGCTCCTGCTCATGCTCCTGCTCCTGTCGCTGCTGCTAACCCTGAAAATCCTGATACTACAACAGGGGTTACACGGGGTGTTGGTTCCAATGAAG GTAGGGCCTTTGGACTTGGGGGTGCTGGTATTGGGGCATCTTTGTTCCCTGGACTTGGCTCGCTAGGTGGCAGCAGCCCATCTGCTCTATTTGGAGATGG GCTTCCTGAATTGGAACAAGTACAACAACGGCTGACTCAGAATCCCGACATGATGAGGGAAATAATGAATACACCTGCTATGCAGAGCCTGATGAATAAC CCTGAGTTAATACGGTCCATGATGATGAGCAATCCTCAGATGCGTGAGATTATGGACCGAAACCCTGAGCTTGCACATGTTCTTAATGATCCAAGCATTC TTAGACAGACATTAGAATCTGCTAGAAACCCTGAGCTCATGCGTGAGATGATGCGACACACTGACAGGGCTATGAGTAATATTGAATCAACTCCTGAAGG ATTTAACATGCTCCGGAGAATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACAACAATGGGTGGAAATGCTGGCAATGATTTGGGTTCAAATCCA TTTGCAACCCTATTGGGGAACCAAGGTGGGACTCAAGTCAGGGACGCTTCAAACAACCCTTCAGCCACTGGTTCTGAAACAACCACAGGGCTTGCTGCTC CTAATACAAACCCTCTGCCCAACCCTTGGAACAATGCTGCTGGAGGAACCCAGACAAACTCTACTGCGAGGCCAAATCCTGCTGGGAGGGCATCAGGTCT TGGTGGTTTGGGTCTGGGAGGGCTTGGTCTCCCAGGAATGGACAATTTGTTCAATAGCATGCCTGATTCGAATCAAATGACTCAATTGTTGCAAAATCCA GCTGTATCACAGATGATGCAAAGCCTACTCTCCAATCCTGAATATATGAACCAGATGCTCAACTTTAATCCCCAACTACGTGGCATGGTTGATTCAAATC CTCAGTTGAGAGAGATGATGCAAAATCCTGAGCTTCTTCGCCAATTAACTTCTCCTGAAACAATGCAGCAAATGCTAGCTTTACAACAGTCCCTTCTTCC GCAGCTCCGACAGCAGGCTACTCAGGAATCAGCACAGCCTGGCGCCCCTACAGGAACACCTAATAATGCTGGGCTGGACATGTTGATGAACATGTTTGGT GGTCTTGGAGCAGGCAGCTTATTAGTACCTAACCAACCCGATGTACCCCCAGAAGAACTTTATGCAACTCAACTATCACAACTACAAGAAATGGGTTTCT TTGATACCCAAGAGAATATCAGGGCATTGCGGGCTACAGCTGGAAATGTACACGCTGCAGTAGAGCGACTTCTGGGGAATCTTGGCCAATGA
AA sequence Show only first row Show all	>Potri.009G166000.1 pacid=42772708 polypeptide=Potri.009G166000.1.p locus=Potri.009G166000 ID=Potri.009G166000.1.v4.1 annot-version=v4.1 MGAAGDSSESKVINEQQGQGEEGAVVINIRCSNGTKFTVRTSLESTVGVFKSLLAQNCDVPPDQQRLIYKGRILKDDLALHSYGLQADHTIHMVRGFSPA PSAPAHAPAPVAAANPENPDTTTGVTRGVGSNEGRAFGLGGAGIGASLFPGLGSLGGSSPSALFGDGLPELEQVQQRLTQNPDMMREIMNTPAMQSLMNN PELIRSMMMSNPQMREIMDRNPELAHVLNDPSILRQTLESARNPELMREMMRHTDRAMSNIESTPEGFNMLRRMYENVQEPFLNATTMGGNAGNDLGSNP FATLLGNQGGTQVRDASNNPSATGSETTTGLAAPNTNPLPNPWNNAAGGTQTNSTARPNPAGRASGLGGLGLGGLGLPGMDNLFNSMPDSNQMTQLLQNP AVSQMMQSLLSNPEYMNQMLNFNPQLRGMVDSNPQLREMMQNPELLRQLTSPETMQQMLALQQSLLPQLRQQATQESAQPGAPTGTPNNAGLDMLMNMFG GLGAGSLLVPNQPDVPPEELYATQLSQLQEMGFFDTQENIRALRATAGNVHAAVERLLGNLGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	2.23	0.6910	CDC48.3
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.014G127400 [exp]	3.00	0.6666
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.015G060800 [exp]	3.46	0.6329
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	6.92	0.6879	EMB78.2
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	15.58	0.5672
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075800 [exp]	19.49	0.5638	ATUBA1.3
AT4G09580			SNARE associated Golgi protein...		Potri.013G113000 [exp]	22.36	0.5355
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Potri.014G047300 [exp]	24.24	0.5394
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.010G022500 [exp]	27.36	0.6023
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	37.73	0.5869

Compare expression of checked genes

Potri.009G166000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.