Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35270 731 / 0 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 687 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G20640 501 / 7e-164 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 481 / 7e-157 NLP5 Plant regulator RWP-RK family protein (.1) AT1G64530 383 / 5e-119 NLP6 Plant regulator RWP-RK family protein (.1) AT3G59580 325 / 8e-97 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 321 / 6e-95 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G38340 281 / 8e-82 NLP3 Plant regulator RWP-RK family protein (.1) AT4G24020 279 / 7e-80 NLP7 NIN like protein 7 (.1) AT4G35590 56 / 1e-07 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166666 [exp] 1619 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 1467 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 874 / 0 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 863 / 0 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 674 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 657 / 0 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 388 / 2e-119 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 386 / 9e-119 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 358 / 2e-108 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014428 [exp] 629 / 0 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 605 / 0 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 605 / 0 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 579 / 0 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 382 / 2e-117 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10019368 [exp] 355 / 9e-108 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 355 / 1e-107 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 345 / 3e-105 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10030744 [exp] 336 / 6e-103 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 333 / 6e-102 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.009G166400.1 pacid=42771459 polypeptide=Potri.009G166400.1.p locus=Potri.009G166400 ID=Potri.009G166400.1.v4.1 annot-version=v4.1 ATGGATGACCACGGTTCCTCTACCCCTAATTCTACATTCGATATTTTCTCAGGAAATGTCACGAACTGGGATTTCATGGATGAAATCTTGTATCAAGGGT GGTTTGAGAAGGATGGAGGGTTCAACTTTCTGCAGCAAGGTCTCTCCACCTCTAATGTTCTACATGACCCTTCACTATATTTTCCCGTTACGGGGACTAC TAATTGGAGTATAGCCTCAAACCAGCAGGACTATCAAGAAGAAACAGAAAGGCATTGCCATGGAAAATCACCACTAGATTATCCAAACAGCACGGAACTT GTTCAGACTGAACTTCAGGTTGAAGATTCTGTGGAGACTTCCACACCTTTCTCGCACCCCGCAAGCTGTCGAGTAGAAGCTGCTGGATTGGGGTTCGAAT GGCAGATGGTGCAGAGAGTAAATCCAGGGACTTCATGTTCTGTGAAGGAGAGAGTAATGCAAGCCGTTGGATACTTAAAAAATTGTATACAAGATAGAGA TATTCTTATCCAGATTTGGCTACCCATGGAGAAAGAAGGGAAAAGAGTACTTGCTACTATTGATCAGCCATACTTTGTCGATCCGAGTTGCAAGAGTCTT GCAAGTTATAGAAAGGTTTCAACAGCCTATCATTTCCAAGCAGAAGAGGATGCAAAATGTTCTGTAGGGTTCCCCGGTCGGGTTTTCTTGGAGAAGCTGC CTGAGTGGACTCCTGACGTACGTCTCTTCAGAAGTGAAGAATATCCACATAGAGATCATGCAGTACAACATAACATTAGAGGGTCTCTTGCACTCCCACT TTTCAAACAAGGCAGTGAGACTTGCTTGGGCATAGTTGAGATTGCGACTACCATTCAGAAGATAAGCTATCGTTCAGAACTACAAGACATTTGCAAAGTT CTCCAGGCTGTTGATCTAAGAAGTTCTGAAGACTTCTGCTCTCCTGGTGTCGAGACTTGCAATCGATTAAATCGAGCTGCGGTGCCTGAGATTTCAGATA TTGTGAAATCTGTTTGCAAGACATATAGTTTGCCCTTGGCTCTAACATGGGCCTTATGTAGCCGGCAAGGTAAAATTGGACGCCAGCAGTTTCCCGAGAG GTTTAGCTCTTGTATTTCCACTGTGGATTCTGCTTGCTTTTTAGCCGACAGAGGTTTTTCAGGTTTTCACATGGCGAGTTTTGAGCAATACCTTTTCCTA GGTCAAGGGATTGTGGGGAGAGCTTTCACAACACAAAAGCAATGTTTCACGAATGATATAACTTCCTTCAGCAAGAAAGATTATCCACTAGCTCACCATG CTAAGATATTTGGTCTTCATGCTGCCATAGCGATTCCCCTGAGAAGCATTTCTACTGGATTGGTTGAATTTGTGGTGGAGTTATTCTTGCCAAAAGATTG CCAAGAGACCGAAGAACAAAAGAAGATGTGGGATTTATTGCCTATTGTCTTAAAACAGGTTTGCAGGAGTCTACAAATTGTCATGGACAAGGAGCTTCAT ATAGGAGAAAATAAGAGTTTTGAATCATCCCCTTCGAAAGAAGCTCCACCCGACGAATCATCTTGGATTGCCAGCATGCTGGAGGCCCAAAAGAAGGGTA AAAGTTGCATTGTCACATGGGACTATCCAAAAGAACCTGAAGAAGAGTTCAAGACGATCATTCATTGGGATGACTCTGCGGTGGAAATAGACCAGAAGCA AGTAATTTCAGAGTTGGGTCGACTTCAGCAACATTCTAGACCCAATATCAATATTGAGGGTGATGGAGTTTCTTTTGCTTTTGGCGGACGTCGCTCGTTA GGAAGCACAAAAGCAGGTAAGAAGAGACGGACCAAGACAGAGATTCAGACAATCAGCTTGGGAGTTCTTCGACAATACTTTGCCGGGAGCCTCAATGATG CTGCTCAAAGCATCGGCGTTTGCCCGACCACTCTGAAAAGGATATGCAGACAACACGGTATCAAACGATGGCCTTCTCGAAAGATCAAGAAGGTTGACCA TTCCTTACGAAAACTGCAGCAGGTGATCGACACAGTCCAAGGTGCCAAGGGAGCCGTTCAAATTGAATCTTTCTATCCAGCCTTCCCAGAGCTGAGCTCT CCAAAACTTTCAAATCATACTTCTTATTCATCATTCAGGAGGATCGATAATTCAAAGCACTTAGACTCTCCACCTGATGATTCTTGCCCTTCTGGCACTG CCTCAAAATCCCATTCTTCTCCGTGTAGTAGGAGCTCTTGTTCAAGTAACTGCTGTTCTGGTCGAGCACAACAGCATGCTGCCACCACAATAACTGGCTC AAGCAATGGAAATGGCTCTTTACTTGCAGAAACCTCGAATGGGATTTTTAAGAGGACTTGCAGTAATGAATTAGCAGAATTGCATTCCTTGAATAACCAA GGTGGACCGGACTTTCTTGTAAGATCGCAAATTCACAAAACTAGGACAGTCAGTGATCATATTCATCAAAATGAGCTAGAAAGTCCACCACGTTTTGGCC CGAGTTTACGAGAAGGAGGTGTCTTCGGTGTTAAAGCCATTTATGGAGTAGAAAAGGTTAGGTTAGGCTTGCAACCAAAGTGGGGTTTAAGAGACTTGCA ACAAGAGATTGGTAAGCGTTTCGAGATAGATGATTTCACATGCATTGGTCTCAAGTATATGGATGATGATGGGGAATGGGTTCTTTTGACTTGTGATAGT GATCTTGAGGAGTGCAAAGAGATACACAGATTCTCTCAAACAAACACAATCAAGATATCCCTTCACAAATATTCTTCTCCATTTGGTTTCCGAGGTTCGT TCTAA
AA sequence Show only first row Show all	>Potri.009G166400.1 pacid=42771459 polypeptide=Potri.009G166400.1.p locus=Potri.009G166400 ID=Potri.009G166400.1.v4.1 annot-version=v4.1 MDDHGSSTPNSTFDIFSGNVTNWDFMDEILYQGWFEKDGGFNFLQQGLSTSNVLHDPSLYFPVTGTTNWSIASNQQDYQEETERHCHGKSPLDYPNSTEL VQTELQVEDSVETSTPFSHPASCRVEAAGLGFEWQMVQRVNPGTSCSVKERVMQAVGYLKNCIQDRDILIQIWLPMEKEGKRVLATIDQPYFVDPSCKSL ASYRKVSTAYHFQAEEDAKCSVGFPGRVFLEKLPEWTPDVRLFRSEEYPHRDHAVQHNIRGSLALPLFKQGSETCLGIVEIATTIQKISYRSELQDICKV LQAVDLRSSEDFCSPGVETCNRLNRAAVPEISDIVKSVCKTYSLPLALTWALCSRQGKIGRQQFPERFSSCISTVDSACFLADRGFSGFHMASFEQYLFL GQGIVGRAFTTQKQCFTNDITSFSKKDYPLAHHAKIFGLHAAIAIPLRSISTGLVEFVVELFLPKDCQETEEQKKMWDLLPIVLKQVCRSLQIVMDKELH IGENKSFESSPSKEAPPDESSWIASMLEAQKKGKSCIVTWDYPKEPEEEFKTIIHWDDSAVEIDQKQVISELGRLQQHSRPNINIEGDGVSFAFGGRRSL GSTKAGKKRRTKTEIQTISLGVLRQYFAGSLNDAAQSIGVCPTTLKRICRQHGIKRWPSRKIKKVDHSLRKLQQVIDTVQGAKGAVQIESFYPAFPELSS PKLSNHTSYSSFRRIDNSKHLDSPPDDSCPSGTASKSHSSPCSRSSCSSNCCSGRAQQHAATTITGSSNGNGSLLAETSNGIFKRTCSNELAELHSLNNQ GGPDFLVRSQIHKTRTVSDHIHQNELESPPRFGPSLREGGVFGVKAIYGVEKVRLGLQPKWGLRDLQQEIGKRFEIDDFTCIGLKYMDDDGEWVLLTCDS DLEECKEIHRFSQTNTIKISLHKYSSPFGFRGSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166400 [exp]	0	1
					Potri.005G081100 [exp]	1.00	0.9836
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.004G208700 [exp]	4.00	0.9703
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.019G023600 [exp]	4.00	0.9831
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G072000 [exp]	6.00	0.9811	Pt-PT2.8,PtrPHT1-1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001401 [exp]	6.32	0.9773
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	8.66	0.9811
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.002G209602 [exp]	9.53	0.9799
AT2G45220			Plant invertase/pectin methyle...		Potri.012G126800 [exp]	10.14	0.9240	Pt-PME.6
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.002G052100 [exp]	10.39	0.9699	CPS.1
AT1G27040			Major facilitator superfamily ...		Potri.002G129500 [exp]	10.81	0.9779

Compare expression of checked genes

Potri.009G166400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.